PDB: 1ky3 Compound: gtp-binding protein ypt7p Classification: ENDOCYTOSIS/EXOCYTOSIS Entry date in PDB: 2002-06-05 Resolution [Å]: 1.35 R-Factor: 0.166

CHAIN: A SWISS-PROT/TREMBL: P32939    KEYWORD: 3D-structure    GTP-binding    Lipoprotein    Prenylation    Protein transport    SCOP: c.37.1.8 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    G proteins    Rab-related protein ypt7p    Baker's yeast (Saccharomyces cerevisiae) GO:  GTP binding    protein transport    small GTPase mediated signal transduction

Image Source: PDB

Loops in ArchDB40 clusters

1ky3_A_84 - EH => SUBCLASS : 3.1.1
1ky3_A_8 - EH => SUBCLASS : 6.1.1

Loops in ArchDB95 clusters

1ky3_A_84 - EH => SUBCLASS : 3.2.1
1ky3_A_8 - EH => SUBCLASS : 6.1.1
1ky3_A_139 - HE => SUBCLASS : 3.39.1

Loops not clustered in ArchDB

1ky3_A_58 - AR
1ky3_A_121 - EH
1ky3_A_154 - EH
1ky3_A_46 - HA
1ky3_A_21 - HE
1ky3_A_100 - HE
1ky3_A_94 - HH

1ky2 A - percentage of sequence identity: 100
1t91 A - percentage of sequence identity: 68
1t91 B - percentage of sequence identity: 68
1t91 C - percentage of sequence identity: 68
1t91 D - percentage of sequence identity: 68
1vg0 B - percentage of sequence identity: 68
1vg1 A - percentage of sequence identity: 68
1vg8 A - percentage of sequence identity: 68
1vg8 B - percentage of sequence identity: 68
1vg8 C - percentage of sequence identity: 68
1vg8 D - percentage of sequence identity: 68
1vg9 B - percentage of sequence identity: 68
1vg9 D - percentage of sequence identity: 68
1vg9 F - percentage of sequence identity: 68
1vg9 H - percentage of sequence identity: 68
1yhn A - percentage of sequence identity: 68