PDB: 1l0w Compound: aspartyl-trna synthetase Classification: LIGASE Entry date in PDB: 2002-03-20 Resolution [Å]: 2.01 R-Factor: 0.217

CHAIN: A SWISS-PROT/TREMBL: P36419    KEYWORD: 3D-structure    Aminoacyl-tRNA synthetase    ATP-binding    Ligase    Protein biosynthesis    EC: 6.1.1.12 SCOP: b.40.4.1 All beta proteins    OB-fold    Nucleic acid-binding proteins    Anticodon-binding domain    Aspartyl-tRNA synthetase (AspRS)    Thermus thermophilus, AspRS-1 SCOP: d.74.4.1 Alpha and beta proteins (a+b)    DCoH-like    Prokaryotic AspRS, insert domain    Prokaryotic AspRS, insert domain    Prokaryotic AspRS, insert domain    Thermus thermophilus, AspRS-1 SCOP: d.104.1.1 Alpha and beta proteins (a+b)    Class II aaRS and biotin synthetases    Class II aaRS and biotin synthetases    Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain    Aspartyl-tRNA synthetase (AspRS)    Thermus thermophilus, AspRS-1 SCOP: d.104.1.1 Alpha and beta proteins (a+b)    Class II aaRS and biotin synthetases    Class II aaRS and biotin synthetases    Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain    Aspartyl-tRNA synthetase (AspRS)    Thermus thermophilus, AspRS-1 GO:  cytoplasm    aspartate-tRNA ligase activity    ATP binding    nucleic acid binding    tRNA ligase activity    aspartyl-tRNA aminoacylation    protein biosynthesis    tRNA aminoacylation for protein translation    CHAIN: B SWISS-PROT/TREMBL: P36419    KEYWORD: 3D-structure    Aminoacyl-tRNA synthetase    ATP-binding    Ligase    Protein biosynthesis    EC: 6.1.1.12 SCOP: b.40.4.1 All beta proteins    OB-fold    Nucleic acid-binding proteins    Anticodon-binding domain    Aspartyl-tRNA synthetase (AspRS)    Thermus thermophilus, AspRS-1 SCOP: d.74.4.1 Alpha and beta proteins (a+b)    DCoH-like    Prokaryotic AspRS, insert domain    Prokaryotic AspRS, insert domain    Prokaryotic AspRS, insert domain    Thermus thermophilus, AspRS-1 SCOP: d.104.1.1 Alpha and beta proteins (a+b)    Class II aaRS and biotin synthetases    Class II aaRS and biotin synthetases    Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain    Aspartyl-tRNA synthetase (AspRS)    Thermus thermophilus, AspRS-1 SCOP: d.104.1.1 Alpha and beta proteins (a+b)    Class II aaRS and biotin synthetases    Class II aaRS and biotin synthetases    Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain    Aspartyl-tRNA synthetase (AspRS)    Thermus thermophilus, AspRS-1 GO:  cytoplasm    aspartate-tRNA ligase activity    ATP binding    nucleic acid binding    tRNA ligase activity    aspartyl-tRNA aminoacylation    protein biosynthesis    tRNA aminoacylation for protein translation

Image Source: PDB

Loops in ArchDB40 clusters

1l0w_A_35 - HA => SUBCLASS : 2.2.2
1l0w_A_350 - HA => SUBCLASS : 2.5.2
1l0w_A_183 - HA => SUBCLASS : 6.5.1
1l0w_A_234 - EH => SUBCLASS : 3.4.1
1l0w_A_193 - EH => SUBCLASS : 3.7.7
1l0w_A_44 - EH => SUBCLASS : 3.9.3
1l0w_A_475 - EH => SUBCLASS : 4.12.1
1l0w_A_193 - EH => SUBCLASS : 4.15.3
1l0w_A_193 - EH => SUBCLASS : 4.15.4
1l0w_A_319 - EH => SUBCLASS : 5.3.1
1l0w_A_131 - HH => SUBCLASS : 1.1.6
1l0w_A_487 - HH => SUBCLASS : 3.3.3

Loops in ArchDB95 clusters

1l0w_A_44 - EH => SUBCLASS : 3.2.1
1l0w_A_234 - EH => SUBCLASS : 3.6.1
1l0w_A_193 - EH => SUBCLASS : 3.10.4
1l0w_A_475 - EH => SUBCLASS : 4.5.2
1l0w_A_193 - EH => SUBCLASS : 4.11.1
1l0w_A_193 - EH => SUBCLASS : 4.11.2
1l0w_A_319 - EH => SUBCLASS : 5.4.1
1l0w_A_475 - EH => SUBCLASS : 5.14.1
1l0w_A_131 - HH => SUBCLASS : 1.1.7
1l0w_A_487 - HH => SUBCLASS : 3.1.1
1l0w_A_35 - HA => SUBCLASS : 2.2.2
1l0w_A_350 - HA => SUBCLASS : 3.11.1
1l0w_A_183 - HA => SUBCLASS : 7.1.1

Loops in ArchDB-EC clusters

1l0w_A_487 - HH => SUBCLASS : 3.3.13

Loops not clustered in ArchDB

1l0w_A_164 - AR
1l0w_A_164 - AR
1l0w_A_90 - EH
1l0w_A_522 - EH
1l0w_A_420 - EH
1l0w_A_385 - EH
1l0w_A_358 - EH
1l0w_A_300 - EH
1l0w_A_276 - EH
1l0w_A_68 - HA
1l0w_A_214 - HA
1l0w_A_467 - HA
1l0w_A_18 - HA
1l0w_A_35 - HA
1l0w_A_68 - HA
1l0w_A_183 - HA
1l0w_A_214 - HA
1l0w_A_350 - HA
1l0w_A_18 - HA
1l0w_A_467 - HA
1l0w_A_509 - HE
1l0w_A_57 - HE
1l0w_A_138 - HE
1l0w_A_201 - HE
1l0w_A_247 - HE
1l0w_A_279 - HE
1l0w_A_313 - HE
1l0w_A_331 - HE
1l0w_A_371 - HE
1l0w_A_393 - HE
1l0w_A_455 - HE
1l0w_A_124 - HH
1l0w_A_529 - HH
1l0w_A_504 - HH
1l0w_A_364 - HH

1efw A - percentage of sequence identity: 100
1efw B - percentage of sequence identity: 100
1g51 A - percentage of sequence identity: 100
1g51 B - percentage of sequence identity: 100
1l0w A - percentage of sequence identity: 100
1l0w B - percentage of sequence identity: 100