ArchDB - Biological DataBase of Protein Loops

Information on 1lnu

PDB: 1lnu
Compound: h-2 class ii histocompatibility antigen, a-b alpha
Classification: SUGAR BINDING PROTEIN
Entry date in PDB: 2002-08-14
Resolution [Å]: 2.50
R-Factor: 0.211

CHAIN: A

SWISS-PROT/TREMBL: P14434
   KEYWORD: 3D-structure    Glycoprotein    MHC II    Signal    Transmembrane
SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    Class II MHC alpha chain, C-terminal domain    Mouse (Mus musculus), I-A group
SCOP: d.19.1.1 Alpha and beta proteins (a+b)    MHC antigen-recognition domain    MHC antigen-recognition domain    MHC antigen-recognition domain    Class II MHC alpha chain, N-terminal domain    Mouse (Mus musculus), I-AB
GO:  membrane    immune response

CHAIN: B

SWISS-PROT/TREMBL: P14483
   KEYWORD: 3D-structure    Glycoprotein    MHC II    Signal    Transmembrane    3D-structure    Glycoprotein    MHC II    Signal    Transmembrane
SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    Class II MHC beta chain, C-terminal domain    Mouse (Mus musculus), I-A group
SCOP: d.19.1.1 Alpha and beta proteins (a+b)    MHC antigen-recognition domain    MHC antigen-recognition domain    MHC antigen-recognition domain    Class II MHC beta chain, N-terminal domain    Mouse (Mus musculus), I-AB
GO:  membrane    immune response

CHAIN: C

CHAIN: D

CHAIN: E

CHAIN: F

CHAIN: G

CHAIN: H

Image Source: PDB

Stored Loops of 1lnu

Loops in ArchDB95 clusters

1lnu_B_182 - AR => SUBCLASS : 5.14.2
1lnu_B_100 - HH => SUBCLASS : 1.5.1

Loops not clustered in ArchDB

1lnu_B_163 - AR
1lnu_B_141 - AR
1lnu_B_72 - EH
1lnu_B_198 - HA
1lnu_B_169 - HA
1lnu_B_35 - HA
1lnu_B_155 - HA
1lnu_B_125 - HA
1lnu_B_61 - HA
1lnu_B_51 - HA
1lnu_B_106 - HE
1lnu_B_81 - HH
1lnu_B_91 - HH

Homologous structures to 1lnu classified in ArchDB

1a6a B - percentage of sequence identity: 63
1aqd B - percentage of sequence identity: 65
1aqd E - percentage of sequence identity: 65
1aqd H - percentage of sequence identity: 65
1aqd K - percentage of sequence identity: 65
1bx2 B - percentage of sequence identity: 65
1bx2 E - percentage of sequence identity: 65
1d5m B - percentage of sequence identity: 63
1d5x B - percentage of sequence identity: 65
1d5z B - percentage of sequence identity: 65
1d6e B - percentage of sequence identity: 65
1d9k D - percentage of sequence identity: 90
1d9k H - percentage of sequence identity: 90
1dlh B - percentage of sequence identity: 65
1dlh E - percentage of sequence identity: 65
1es0 B - percentage of sequence identity: 87
1f3j B - percentage of sequence identity: 88
1f3j E - percentage of sequence identity: 88
1fne B - percentage of sequence identity: 65
1fne D - percentage of sequence identity: 65
1fng B - percentage of sequence identity: 65
1fng D - percentage of sequence identity: 65
1fv1 B - percentage of sequence identity: 63
1fv1 E - percentage of sequence identity: 64
1fyt B - percentage of sequence identity: 65
1h15 B - percentage of sequence identity: 64
1h15 E - percentage of sequence identity: 64
1hqr B - percentage of sequence identity: 64
1hxy B - percentage of sequence identity: 65
1i3r B - percentage of sequence identity: 67
1i3r D - percentage of sequence identity: 65
1i3r F - percentage of sequence identity: 65
1i3r H - percentage of sequence identity: 65
1iak A - percentage of sequence identity: 93
1iak B - percentage of sequence identity: 90
1iao B - percentage of sequence identity: 92
1iea B - percentage of sequence identity: 65
1iea D - percentage of sequence identity: 65
1ieb B - percentage of sequence identity: 66
1ieb D - percentage of sequence identity: 66
1j8h B - percentage of sequence identity: 64
1jk8 A - percentage of sequence identity: 70
1jk8 B - percentage of sequence identity: 78
1jl4 B - percentage of sequence identity: 90
1jwm B - percentage of sequence identity: 65
1jws B - percentage of sequence identity: 65
1jwu B - percentage of sequence identity: 65
1k2d A - percentage of sequence identity: 96
1k2d B - percentage of sequence identity: 90
1kg0 B - percentage of sequence identity: 65
1klg B - percentage of sequence identity: 65
1klu B - percentage of sequence identity: 65
1kt2 B - percentage of sequence identity: 65
1kt2 D - percentage of sequence identity: 65
1ktd B - percentage of sequence identity: 67
1ktd D - percentage of sequence identity: 64
1lnu B - percentage of sequence identity: 100
1lnu D - percentage of sequence identity: 100
1lnu F - percentage of sequence identity: 100
1lnu H - percentage of sequence identity: 100
1lo5 B - percentage of sequence identity: 65
1muj A - percentage of sequence identity: 100
1muj B - percentage of sequence identity: 98
1pyw B - percentage of sequence identity: 65
1r5i B - percentage of sequence identity: 65
1r5i F - percentage of sequence identity: 65
1r5v B - percentage of sequence identity: 67
1r5v D - percentage of sequence identity: 67
1r5w B - percentage of sequence identity: 67
1r5w D - percentage of sequence identity: 67
1s9v B - percentage of sequence identity: 75
1s9v E - percentage of sequence identity: 76
1seb B - percentage of sequence identity: 65
1seb F - percentage of sequence identity: 65
1sje B - percentage of sequence identity: 65
1sjh B - percentage of sequence identity: 65
1t5w B - percentage of sequence identity: 65
1t5w E - percentage of sequence identity: 65
1t5x B - percentage of sequence identity: 65
1u3h D - percentage of sequence identity: 90
1u3h H - percentage of sequence identity: 90
1uvq B - percentage of sequence identity: 77
1ymm B - percentage of sequence identity: 65
1zgl B - percentage of sequence identity: 64
1zgl E - percentage of sequence identity: 64
1zgl H - percentage of sequence identity: 64
1zgl K - percentage of sequence identity: 64
2iad A - percentage of sequence identity: 91
2iad B - percentage of sequence identity: 93
2seb B - percentage of sequence identity: 65