PDB: 1lp1 Compound: affibody binding protein z Classification: IMMUNE SYSTEM Entry date in PDB: 2003-03-18 Resolution [Å]: 2.30 R-Factor: 0.224

CHAIN: B SWISS-PROT/TREMBL: P38507    KEYWORD: 3D-structure    Cell wall    IgG-binding protein    Peptidoglycan-anchor    Repeat    Signal    SCOP: a.8.1.1 All alpha proteins    immunoglobulin/albumin-binding domain-like    Bacterial immunoglobulin/albumin-binding domains    Immunoglobulin-binding protein A modules    Immunoglobulin-binding protein A modules    Staphylococcus aureus GO:  cell surface    membrane    immunoglobulin binding    cell wall catabolism

Image Source: PDB

Loops in ArchDB40 clusters

1lp1_A_24 - HH => SUBCLASS : 1.2.13
1lp1_A_24 - HH => SUBCLASS : 1.2.15
1lp1_A_5 - HH => SUBCLASS : 5.4.4

Loops in ArchDB95 clusters

1lp1_A_24 - HH => SUBCLASS : 1.2.13
1lp1_B_24 - HH => SUBCLASS : 1.2.13
1lp1_A_5 - HH => SUBCLASS : 5.3.5

Loops not clustered in ArchDB

1lp1_B_6 - HH

1bdc - - percentage of sequence identity: 75
1bdd - - percentage of sequence identity: 75
1dee G - percentage of sequence identity: 61
1dee H - percentage of sequence identity: 61
1edi - - percentage of sequence identity: 63
1edj - - percentage of sequence identity: 63
1edk - - percentage of sequence identity: 63
1edl - - percentage of sequence identity: 63
1fc2 C - percentage of sequence identity: 71
1h0t A - percentage of sequence identity: 77
1h0t B - percentage of sequence identity: 100
1lp1 A - percentage of sequence identity: 77
1lp1 B - percentage of sequence identity: 77
1q2n A - percentage of sequence identity: 77
1ss1 A - percentage of sequence identity: 75
1zxg A - percentage of sequence identity: 70
2spz A - percentage of sequence identity: 77