PDB: 1m5h Compound: formylmethanofuran--tetrahydromethanopterin formyl Classification: TRANSFERASE Entry date in PDB: 2002-07-26 Resolution [Å]: 2.00 R-Factor: 0.229

CHAIN: A SWISS-PROT/TREMBL: O28076    KEYWORD: 3D-structure    Acyltransferase    Complete proteome    One-carbon metabolism    Transferase    EC: 2.3.1.101 SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Archaeoglobus fulgidus SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Archaeoglobus fulgidus GO:  transferase activity    methanogenesis    CHAIN: B SWISS-PROT/TREMBL: O28076    KEYWORD: 3D-structure    Acyltransferase    Complete proteome    One-carbon metabolism    Transferase    EC: 2.3.1.101 SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Archaeoglobus fulgidus SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Archaeoglobus fulgidus GO:  transferase activity    methanogenesis    CHAIN: C SWISS-PROT/TREMBL: O28076    KEYWORD: 3D-structure    Acyltransferase    Complete proteome    One-carbon metabolism    Transferase    EC: 2.3.1.101 SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Archaeoglobus fulgidus SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Archaeoglobus fulgidus GO:  transferase activity    methanogenesis    CHAIN: D SWISS-PROT/TREMBL: O28076    KEYWORD: 3D-structure    Acyltransferase    Complete proteome    One-carbon metabolism    Transferase    EC: 2.3.1.101 SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Archaeoglobus fulgidus SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Archaeoglobus fulgidus GO:  transferase activity    methanogenesis    CHAIN: E SWISS-PROT/TREMBL: O28076    KEYWORD: 3D-structure    Acyltransferase    Complete proteome    One-carbon metabolism    Transferase    EC: 2.3.1.101 SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Archaeoglobus fulgidus SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Archaeoglobus fulgidus GO:  transferase activity    methanogenesis    CHAIN: F SWISS-PROT/TREMBL: O28076    KEYWORD: 3D-structure    Acyltransferase    Complete proteome    One-carbon metabolism    Transferase    EC: 2.3.1.101 SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Archaeoglobus fulgidus SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Archaeoglobus fulgidus GO:  transferase activity    methanogenesis    CHAIN: G SWISS-PROT/TREMBL: O28076    KEYWORD: 3D-structure    Acyltransferase    Complete proteome    One-carbon metabolism    Transferase    EC: 2.3.1.101 SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Archaeoglobus fulgidus SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Archaeoglobus fulgidus GO:  transferase activity    methanogenesis    CHAIN: H SWISS-PROT/TREMBL: O28076    KEYWORD: 3D-structure    Acyltransferase    Complete proteome    One-carbon metabolism    Transferase    EC: 2.3.1.101 SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Archaeoglobus fulgidus SCOP: d.58.33.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Formylmethanofuran:tetrahydromethanopterin formyltransferase    Archaeon Archaeoglobus fulgidus GO:  transferase activity    methanogenesis

Image Source: PDB

Loops in ArchDB95 clusters

1m5h_A_114 - EH => SUBCLASS : 0.1.42
1m5h_A_71 - EH => SUBCLASS : 2.1.1
1m5h_A_12 - EH => SUBCLASS : 2.1.38
1m5h_A_274 - AR => SUBCLASS : 7.33.1
1m5h_A_173 - HE => SUBCLASS : 3.7.1
1m5h_A_254 - HE => SUBCLASS : 3.7.1
1m5h_A_173 - HE => SUBCLASS : 3.7.2
1m5h_A_254 - HE => SUBCLASS : 3.7.2
1m5h_A_117 - HE => SUBCLASS : 4.23.1
1m5h_A_53 - HA => SUBCLASS : 9.9.1

Loops in ArchDB-EC clusters

1m5h_A_254 - HE => SUBCLASS : 3.14.1

Loops not clustered in ArchDB

1m5h_A_274 - AR
1m5h_A_148 - AR
1m5h_A_103 - AR
1m5h_A_6 - AR
1m5h_A_148 - AR
1m5h_A_103 - AR
1m5h_A_6 - AR
1m5h_A_155 - EH
1m5h_A_193 - EH
1m5h_A_243 - EH
1m5h_A_2 - HA
1m5h_A_137 - HA
1m5h_A_130 - HA
1m5h_A_53 - HA
1m5h_A_2 - HA
1m5h_A_130 - HA
1m5h_A_137 - HA
1m5h_A_30 - HE
1m5h_A_81 - HE
1m5h_A_229 - HE

1ftr A - percentage of sequence identity: 60
1ftr B - percentage of sequence identity: 60
1ftr C - percentage of sequence identity: 60
1ftr D - percentage of sequence identity: 60
1m5h A - percentage of sequence identity: 100
1m5h B - percentage of sequence identity: 100
1m5h C - percentage of sequence identity: 100
1m5h D - percentage of sequence identity: 100
1m5h E - percentage of sequence identity: 100
1m5h F - percentage of sequence identity: 100
1m5h G - percentage of sequence identity: 100
1m5h H - percentage of sequence identity: 100
1m5s A - percentage of sequence identity: 68
1m5s B - percentage of sequence identity: 68
1m5s C - percentage of sequence identity: 68
1m5s D - percentage of sequence identity: 68