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Information on 1m5w
PDB: 1m5w
Compound: pyridoxal phosphate biosynthetic protein pdxj
Classification: BIOSYNTHETIC PROTEIN
Entry date in PDB: 2003-07-15
Resolution [Å]: 1.96
R-Factor: 0.195


CHAIN: A
SWISS-PROT/TREMBL: P24223
   KEYWORD: 3D-structure    Complete proteome    Pyridoxine biosynthesis   
SCOP: c.1.24.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Pyridoxine 5'-phosphate synthase    Pyridoxine 5'-phosphate synthase    Pyridoxine 5'-phosphate synthase    Escherichia coli
GO:  


CHAIN: B
SWISS-PROT/TREMBL: P24223
   KEYWORD: 3D-structure    Complete proteome    Pyridoxine biosynthesis   
SCOP: c.1.24.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Pyridoxine 5'-phosphate synthase    Pyridoxine 5'-phosphate synthase    Pyridoxine 5'-phosphate synthase    Escherichia coli
GO:  


CHAIN: C
SWISS-PROT/TREMBL: P24223
   KEYWORD: 3D-structure    Complete proteome    Pyridoxine biosynthesis   
SCOP: c.1.24.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Pyridoxine 5'-phosphate synthase    Pyridoxine 5'-phosphate synthase    Pyridoxine 5'-phosphate synthase    Escherichia coli
GO:  


CHAIN: D
SWISS-PROT/TREMBL: P24223
   KEYWORD: 3D-structure    Complete proteome    Pyridoxine biosynthesis   
SCOP: c.1.24.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Pyridoxine 5'-phosphate synthase    Pyridoxine 5'-phosphate synthase    Pyridoxine 5'-phosphate synthase    Escherichia coli
GO:  


CHAIN: E
SWISS-PROT/TREMBL: P24223
   KEYWORD: 3D-structure    Complete proteome    Pyridoxine biosynthesis   
SCOP: c.1.24.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Pyridoxine 5'-phosphate synthase    Pyridoxine 5'-phosphate synthase    Pyridoxine 5'-phosphate synthase    Escherichia coli
GO:  


CHAIN: F
SWISS-PROT/TREMBL: P24223
   KEYWORD: 3D-structure    Complete proteome    Pyridoxine biosynthesis   
SCOP: c.1.24.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Pyridoxine 5'-phosphate synthase    Pyridoxine 5'-phosphate synthase    Pyridoxine 5'-phosphate synthase    Escherichia coli
GO:  


CHAIN: G
SWISS-PROT/TREMBL: P24223
   KEYWORD: 3D-structure    Complete proteome    Pyridoxine biosynthesis   
SCOP: c.1.24.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Pyridoxine 5'-phosphate synthase    Pyridoxine 5'-phosphate synthase    Pyridoxine 5'-phosphate synthase    Escherichia coli
GO:  


CHAIN: H
SWISS-PROT/TREMBL: P24223
   KEYWORD: 3D-structure    Complete proteome    Pyridoxine biosynthesis   
SCOP: c.1.24.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Pyridoxine 5'-phosphate synthase    Pyridoxine 5'-phosphate synthase    Pyridoxine 5'-phosphate synthase    Escherichia coli
GO:  
1m5w Image
Image Source: PDB

Stored Loops of 1m5w

Loops in ArchDB40 clusters

1m5w_A_151 - EH => SUBCLASS : 0.1.10
1m5w_A_5 - EH => SUBCLASS : 0.1.17
1m5w_A_209 - EH => SUBCLASS : 0.1.23
1m5w_A_209 - EH => SUBCLASS : 0.1.24
1m5w_A_151 - EH => SUBCLASS : 1.3.9
1m5w_A_68 - EH => SUBCLASS : 3.8.2
1m5w_A_129 - EH => SUBCLASS : 3.8.4
1m5w_A_216 - HH => SUBCLASS : 1.4.1
1m5w_A_157 - HH => SUBCLASS : 3.4.1
1m5w_A_157 - HH => SUBCLASS : 3.4.2
1m5w_A_157 - HH => SUBCLASS : 3.4.3

Loops in ArchDB95 clusters

1m5w_A_5 - EH => SUBCLASS : 0.1.13
1m5w_A_5 - EH => SUBCLASS : 0.1.21
1m5w_A_151 - EH => SUBCLASS : 0.1.27
1m5w_A_209 - EH => SUBCLASS : 0.1.32
1m5w_A_209 - EH => SUBCLASS : 0.1.76
1m5w_A_68 - EH => SUBCLASS : 2.4.2
1m5w_A_68 - EH => SUBCLASS : 3.8.2
1m5w_A_129 - EH => SUBCLASS : 3.8.5
1m5w_A_216 - HH => SUBCLASS : 1.4.1
1m5w_A_157 - HH => SUBCLASS : 3.3.1
1m5w_A_157 - HH => SUBCLASS : 3.3.2

Loops not clustered in ArchDB

1m5w_A_41 - EH
1m5w_A_90 - EH
1m5w_A_188 - EH
1m5w_A_200 - HE
1m5w_A_165 - HE
1m5w_A_138 - HE
1m5w_A_113 - HE
1m5w_A_77 - HE
1m5w_A_55 - HE
1m5w_A_27 - HE
1m5w_A_11 - HH

Homologous structures to 1m5w classified in ArchDB

1ho1 A - percentage of sequence identity: 100
1ho1 B - percentage of sequence identity: 100
1ho1 C - percentage of sequence identity: 100
1ho1 D - percentage of sequence identity: 100
1ho4 A - percentage of sequence identity: 100
1ho4 B - percentage of sequence identity: 100
1ho4 C - percentage of sequence identity: 100
1ho4 D - percentage of sequence identity: 100
1ixn A - percentage of sequence identity: 100
1ixn B - percentage of sequence identity: 100
1ixn C - percentage of sequence identity: 100
1ixn D - percentage of sequence identity: 100
1ixo A - percentage of sequence identity: 100
1ixo B - percentage of sequence identity: 100
1ixo C - percentage of sequence identity: 100
1ixo D - percentage of sequence identity: 100
1ixp A - percentage of sequence identity: 100
1ixp B - percentage of sequence identity: 100
1ixp C - percentage of sequence identity: 100
1ixp D - percentage of sequence identity: 100
1ixq A - percentage of sequence identity: 100
1ixq B - percentage of sequence identity: 100
1ixq C - percentage of sequence identity: 100
1ixq D - percentage of sequence identity: 100
1m5w A - percentage of sequence identity: 100
1m5w B - percentage of sequence identity: 100
1m5w C - percentage of sequence identity: 100
1m5w D - percentage of sequence identity: 100
1m5w E - percentage of sequence identity: 100
1m5w F - percentage of sequence identity: 100
1m5w G - percentage of sequence identity: 100
1m5w H - percentage of sequence identity: 100