PDB: 1m8z Compound: pumilio 1 Classification: RNA BINDING PROTEIN Entry date in PDB: 2002-09-04 Resolution [Å]: 1.90 R-Factor: 0.194

CHAIN: A SWISS-PROT/TREMBL: Q14671    KEYWORD: 3D-structure    Repeat    RNA-binding    Translation regulation    SCOP: a.118.1.8 All alpha proteins    alpha-alpha superhelix    ARM repeat    Pumilio repeat    Pumilio 1    Human (Homo sapiens) GO:  binding    RNA binding    mRNA metabolism

Image Source: PDB

Loops in ArchDB40 clusters

1m8z_A_1091 - HE => SUBCLASS : 0.1.2
1m8z_A_1105 - HA => SUBCLASS : 2.3.1
1m8z_A_853 - HH => SUBCLASS : 1.1.3
1m8z_A_997 - HH => SUBCLASS : 1.1.3
1m8z_A_925 - HH => SUBCLASS : 1.1.3
1m8z_A_1069 - HH => SUBCLASS : 1.1.6
1m8z_A_997 - HH => SUBCLASS : 1.1.6
1m8z_A_1033 - HH => SUBCLASS : 1.1.6
1m8z_A_853 - HH => SUBCLASS : 1.1.8
1m8z_A_925 - HH => SUBCLASS : 1.1.12
1m8z_A_889 - HH => SUBCLASS : 1.1.12
1m8z_A_961 - HH => SUBCLASS : 1.1.12
1m8z_A_1111 - HH => SUBCLASS : 1.1.12
1m8z_A_1148 - HH => SUBCLASS : 1.1.28
1m8z_A_1121 - HH => SUBCLASS : 2.1.1
1m8z_A_860 - HH => SUBCLASS : 2.1.1
1m8z_A_1078 - HH => SUBCLASS : 2.1.1
1m8z_A_934 - HH => SUBCLASS : 2.1.1
1m8z_A_1121 - HH => SUBCLASS : 2.1.4
1m8z_A_1078 - HH => SUBCLASS : 2.1.4
1m8z_A_1006 - HH => SUBCLASS : 2.1.18
1m8z_A_898 - HH => SUBCLASS : 2.1.18
1m8z_A_1042 - HH => SUBCLASS : 2.1.18
1m8z_A_911 - HH => SUBCLASS : 2.8.1
1m8z_A_1055 - HH => SUBCLASS : 2.8.1
1m8z_A_987 - HH => SUBCLASS : 2.8.1

Loops in ArchDB95 clusters

1m8z_A_853 - HH => SUBCLASS : 1.1.1
1m8z_A_853 - HH => SUBCLASS : 1.1.3
1m8z_A_853 - HH => SUBCLASS : 1.1.5
1m8z_A_1069 - HH => SUBCLASS : 1.1.7
1m8z_A_997 - HH => SUBCLASS : 1.1.7
1m8z_A_1033 - HH => SUBCLASS : 1.1.7
1m8z_A_961 - HH => SUBCLASS : 1.1.13
1m8z_A_925 - HH => SUBCLASS : 1.1.17
1m8z_A_997 - HH => SUBCLASS : 1.1.17
1m8z_A_1111 - HH => SUBCLASS : 1.1.17
1m8z_A_889 - HH => SUBCLASS : 1.1.17
1m8z_A_1148 - HH => SUBCLASS : 1.1.41
1m8z_A_925 - HH => SUBCLASS : 1.1.48
1m8z_A_1069 - HH => SUBCLASS : 1.1.63
1m8z_A_1078 - HH => SUBCLASS : 2.1.1
1m8z_A_934 - HH => SUBCLASS : 2.1.1
1m8z_A_860 - HH => SUBCLASS : 2.1.1
1m8z_A_1121 - HH => SUBCLASS : 2.1.1
1m8z_A_1006 - HH => SUBCLASS : 2.1.9
1m8z_A_911 - HH => SUBCLASS : 2.11.1
1m8z_A_1055 - HH => SUBCLASS : 2.11.1
1m8z_A_987 - HH => SUBCLASS : 2.11.1
1m8z_A_1091 - HE => SUBCLASS : 0.1.3
1m8z_A_1105 - HA => SUBCLASS : 2.3.1

Loops not clustered in ArchDB

1m8z_A_1109 - EH
1m8z_A_831 - HH
1m8z_A_875 - HH
1m8z_A_947 - HH
1m8z_A_970 - HH
1m8z_A_1019 - HH
1m8z_A_1134 - HH

1ib2 A - percentage of sequence identity: 100
1m8w A - percentage of sequence identity: 100
1m8w B - percentage of sequence identity: 100
1m8x A - percentage of sequence identity: 100
1m8x B - percentage of sequence identity: 100
1m8y A - percentage of sequence identity: 100
1m8y B - percentage of sequence identity: 100