PDB: 1mda Compound: Methylamine dehydrogenase complex with amicyanin Classification: ELECTRON TRANSPORT Entry date in PDB: 1993-10-31 Resolution [Å]: 2.50 R-Factor: 0.285

CHAIN: A SWISS-PROT/TREMBL: P22364    KEYWORD: 3D-structure    Copper    Electron transport    Periplasmic    Signal    SCOP: b.6.1.1 All beta proteins    Cupredoxin-like    Cupredoxins    Plastocyanin/azurin-like    Amicyanin    Paracoccus denitrificans GO:  copper ion binding    electron transporter activity    electron transport    CHAIN: B SWISS-PROT/TREMBL: P22364    KEYWORD: 3D-structure    Copper    Electron transport    Periplasmic    Signal    SCOP: b.6.1.1 All beta proteins    Cupredoxin-like    Cupredoxins    Plastocyanin/azurin-like    Amicyanin    Paracoccus denitrificans GO:  copper ion binding    electron transporter activity    electron transport

Image Source: PDB

Loops in ArchDB40 clusters

1mda_H_148 - HA => SUBCLASS : 2.1.1
1mda_H_171 - HA => SUBCLASS : 2.2.1
1mda_H_224 - HA => SUBCLASS : 2.2.1
1mda_H_234 - HA => SUBCLASS : 3.23.1
1mda_H_328 - HA => SUBCLASS : 4.1.1
1mda_H_94 - HA => SUBCLASS : 4.1.2
1mda_H_338 - HA => SUBCLASS : 4.2.1
1mda_H_69 - HA => SUBCLASS : 5.2.1
1mda_H_129 - HA => SUBCLASS : 5.2.2
1mda_H_269 - HA => SUBCLASS : 5.10.1
1mda_H_234 - HA => SUBCLASS : 5.25.1
1mda_H_94 - HA => SUBCLASS : 6.1.2
1mda_H_318 - HA => SUBCLASS : 6.33.1
1mda_H_311 - AR => SUBCLASS : 1.1.1
1mda_H_57 - AR => SUBCLASS : 4.6.1

Loops in ArchDB95 clusters

1mda_H_57 - AR => SUBCLASS : 1.1.2
1mda_L_51 - AR => SUBCLASS : 3.1.6
1mda_L_51 - AR => SUBCLASS : 3.7.1
1mda_H_57 - AR => SUBCLASS : 4.2.3
1mda_H_157 - AR => SUBCLASS : 6.47.1
1mda_H_148 - HA => SUBCLASS : 2.1.1
1mda_H_171 - HA => SUBCLASS : 2.2.1
1mda_H_224 - HA => SUBCLASS : 2.2.1
1mda_H_269 - HA => SUBCLASS : 2.2.38
1mda_H_338 - HA => SUBCLASS : 3.1.2
1mda_H_234 - HA => SUBCLASS : 3.28.1
1mda_H_328 - HA => SUBCLASS : 4.1.1
1mda_H_94 - HA => SUBCLASS : 4.1.2
1mda_H_269 - HA => SUBCLASS : 4.4.2
1mda_L_57 - HA => SUBCLASS : 4.4.2
1mda_H_129 - HA => SUBCLASS : 5.2.2
1mda_H_69 - HA => SUBCLASS : 5.2.3
1mda_H_234 - HA => SUBCLASS : 5.29.1
1mda_H_318 - HA => SUBCLASS : 5.31.1
1mda_H_94 - HA => SUBCLASS : 6.2.1
1mda_H_94 - HA => SUBCLASS : 6.2.2
1mda_H_224 - HA => SUBCLASS : 7.6.1

Loops not clustered in ArchDB

1mda_L_117 - AR
1mda_H_261 - AR
1mda_H_348 - AR
1mda_H_200 - AR
1mda_L_32 - AR
1mda_L_69 - AR
1mda_H_108 - AR
1mda_L_76 - AR
1mda_L_87 - AR
1mda_H_306 - AR
1mda_H_244 - EH
1mda_H_293 - HA
1mda_H_277 - HA
1mda_H_46 - HA
1mda_H_79 - HA
1mda_H_138 - HA
1mda_H_177 - HA
1mda_H_188 - HA
1mda_H_217 - HA
1mda_H_33 - HA
1mda_H_255 - HE
1mda_H_8 - HE

1aac - - percentage of sequence identity: 100
1id2 A - percentage of sequence identity: 62
1mae H - percentage of sequence identity: 60
1maf H - percentage of sequence identity: 60
1mda H - percentage of sequence identity: 100
1mda J - percentage of sequence identity: 100
2mad H - percentage of sequence identity: 60
null nu - percentage of sequence identity: 0