PDB: 1mp9 Compound: tata-binding protein Classification: DNA BINDING PROTEIN Entry date in PDB: 2003-11-04 Resolution [Å]: 2.00 R-Factor: 0.209

CHAIN: A SWISS-PROT/TREMBL: Q9UWN7    KEYWORD: DNA-binding    Repeat    Transcription regulation    SCOP: d.129.1.1 Alpha and beta proteins (a+b)    TBP-like    TATA-box binding protein-like    TATA-box binding protein (TBP), C-terminal domain    TATA-box binding protein (TBP), C-terminal domain    Archaeon Sulfolobus acidocaldarius SCOP: d.129.1.1 Alpha and beta proteins (a+b)    TBP-like    TATA-box binding protein-like    TATA-box binding protein (TBP), C-terminal domain    TATA-box binding protein (TBP), C-terminal domain    Archaeon Sulfolobus acidocaldarius GO:  nucleus    transcription factor TFIID complex    binding    DNA binding    RNA polymerase II transcription factor activity    regulation of transcription, DNA-dependent    transcription initiation from RNA polymerase II promoter    CHAIN: B SWISS-PROT/TREMBL: Q9UWN7    KEYWORD: DNA-binding    Repeat    Transcription regulation    SCOP: d.129.1.1 Alpha and beta proteins (a+b)    TBP-like    TATA-box binding protein-like    TATA-box binding protein (TBP), C-terminal domain    TATA-box binding protein (TBP), C-terminal domain    Archaeon Sulfolobus acidocaldarius SCOP: d.129.1.1 Alpha and beta proteins (a+b)    TBP-like    TATA-box binding protein-like    TATA-box binding protein (TBP), C-terminal domain    TATA-box binding protein (TBP), C-terminal domain    Archaeon Sulfolobus acidocaldarius GO:  nucleus    transcription factor TFIID complex    binding    DNA binding    RNA polymerase II transcription factor activity    regulation of transcription, DNA-dependent    transcription initiation from RNA polymerase II promoter

Image Source: PDB

Loops in ArchDB95 clusters

1mp9_A_118 - EH => SUBCLASS : 1.1.13
1mp9_A_118 - EH => SUBCLASS : 1.1.14
1mp9_A_159 - EH => SUBCLASS : 2.1.4
1mp9_A_68 - EH => SUBCLASS : 5.13.1
1mp9_A_168 - HE => SUBCLASS : 2.4.1
1mp9_A_77 - HE => SUBCLASS : 8.4.1
1mp9_A_50 - HA => SUBCLASS : 3.20.2
1mp9_A_150 - HA => SUBCLASS : 4.5.1
1mp9_A_59 - HA => SUBCLASS : 4.5.1
1mp9_A_141 - HA => SUBCLASS : 4.10.1
1mp9_A_131 - HA => SUBCLASS : 5.35.1

Loops not clustered in ArchDB

1mp9_A_103 - AR
1mp9_A_12 - EH
1mp9_A_30 - HE
1mp9_A_121 - HE

1mp9 A - percentage of sequence identity: 100
1mp9 B - percentage of sequence identity: 100