PDB: 1mu5 Compound: type ii DNA topoisomerase vi subunit b Classification: ISOMERASE Entry date in PDB: 2003-01-07 Resolution [Å]: 2.00 R-Factor: 0.216

CHAIN: A SWISS-PROT/TREMBL: O05207    KEYWORD: 3D-structure    ATP-binding    DNA-binding    Isomerase    Topoisomerase    EC: 5.99.1.3 SCOP: a.156.1.3 All alpha proteins    S13-like H2TH domain    S13-like H2TH domain    Topoisomerase VI-B subunit middle domain    Topoisomerase VI-B subunit middle domain    Archaeon Sulfolobus shibatae SCOP: d.14.1.3 Alpha and beta proteins (a+b)    Ribosomal protein S5 domain 2-like    Ribosomal protein S5 domain 2-like    DNA gyrase/MutL, second domain    Topoisomerase VI-B subunit    Archaeon Sulfolobus shibatae SCOP: d.122.1.2 Alpha and beta proteins (a+b)    ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase    ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase    DNA gyrase/MutL, N-terminal domain    Topoisomerase VI-B subunit    Archaeon Sulfolobus shibatae GO:  chromosome    ATP binding    DNA binding    DNA topoisomerase (ATP-hydrolyzing) activity    DNA topological change    DNA unwinding

Image Source: PDB

Loops in ArchDB40 clusters

1mu5_A_180 - HE => SUBCLASS : 0.1.23
1mu5_A_180 - HE => SUBCLASS : 1.2.4
1mu5_A_319 - HE => SUBCLASS : 3.1.5
1mu5_A_319 - HE => SUBCLASS : 3.6.8
1mu5_A_369 - HA => SUBCLASS : 2.1.1
1mu5_A_343 - HA => SUBCLASS : 2.1.1
1mu5_A_202 - HA => SUBCLASS : 3.1.1
1mu5_A_55 - HA => SUBCLASS : 4.1.2
1mu5_A_138 - HA => SUBCLASS : 4.1.2
1mu5_A_127 - HA => SUBCLASS : 5.20.1

Loops in ArchDB95 clusters

1mu5_A_319 - HE => SUBCLASS : 3.1.2
1mu5_A_343 - HA => SUBCLASS : 2.1.1
1mu5_A_369 - HA => SUBCLASS : 2.1.1
1mu5_A_343 - HA => SUBCLASS : 2.1.4
1mu5_A_343 - HA => SUBCLASS : 2.1.5
1mu5_A_202 - HA => SUBCLASS : 3.1.1
1mu5_A_55 - HA => SUBCLASS : 4.1.2
1mu5_A_138 - HA => SUBCLASS : 4.1.2
1mu5_A_127 - HA => SUBCLASS : 5.20.1

Loops in ArchDB-EC clusters

1mu5_A_319 - HE => SUBCLASS : 3.2.2

Loops not clustered in ArchDB

1mu5_A_334 - AR
1mu5_A_153 - AR
1mu5_A_348 - AR
1mu5_A_153 - AR
1mu5_A_348 - AR
1mu5_A_334 - AR
1mu5_A_69 - EH
1mu5_A_409 - EH
1mu5_A_377 - EH
1mu5_A_212 - EH
1mu5_A_169 - EH
1mu5_A_343 - HA
1mu5_A_138 - HA
1mu5_A_127 - HA
1mu5_A_55 - HA
1mu5_A_202 - HA
1mu5_A_369 - HA
1mu5_A_28 - HE
1mu5_A_112 - HE
1mu5_A_387 - HE
1mu5_A_12 - HH
1mu5_A_86 - HH
1mu5_A_238 - HH
1mu5_A_254 - HH
1mu5_A_267 - HH
1mu5_A_292 - HH

1mx0 A - percentage of sequence identity: 100
1mx0 B - percentage of sequence identity: 100
1mx0 C - percentage of sequence identity: 100
1mx0 D - percentage of sequence identity: 100
1mx0 E - percentage of sequence identity: 100
1mx0 F - percentage of sequence identity: 100
1z59 A - percentage of sequence identity: 100
1z5a A - percentage of sequence identity: 100
1z5a B - percentage of sequence identity: 100
1z5b A - percentage of sequence identity: 100
1z5b B - percentage of sequence identity: 100
1z5c A - percentage of sequence identity: 100
1z5c B - percentage of sequence identity: 100