PDB: 1muj Compound: h-2 class ii histocompatibility antigen, a-b alpha Classification: IMMUNE SYSTEM Entry date in PDB: 2003-02-18 Resolution [Å]: 2.15 R-Factor: 0.220

CHAIN: A SWISS-PROT/TREMBL: P14434    KEYWORD: 3D-structure    Glycoprotein    MHC II    Signal    Transmembrane    SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    Class II MHC alpha chain, C-terminal domain    Mouse (Mus musculus), I-A group SCOP: d.19.1.1 Alpha and beta proteins (a+b)    MHC antigen-recognition domain    MHC antigen-recognition domain    MHC antigen-recognition domain    Class II MHC alpha chain, N-terminal domain    Mouse (Mus musculus), I-AB GO:  membrane    immune response    CHAIN: B SWISS-PROT/TREMBL: P14483    KEYWORD: 3D-structure    Glycoprotein    MHC II    Signal    Transmembrane    SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    Class II MHC beta chain, C-terminal domain    Mouse (Mus musculus), I-A group SCOP: d.19.1.1 Alpha and beta proteins (a+b)    MHC antigen-recognition domain    MHC antigen-recognition domain    MHC antigen-recognition domain    Class II MHC beta chain, N-terminal domain    Mouse (Mus musculus), I-AB GO:  membrane    immune response

Image Source: PDB

Loops in ArchDB95 clusters

1muj_A_40 - EH => SUBCLASS : 2.1.4
1muj_B_47 - EH => SUBCLASS : 3.3.12
1muj_A_145 - AR => SUBCLASS : 4.12.4
1muj_B_155 - AR => SUBCLASS : 5.14.2
1muj_A_118 - AR => SUBCLASS : 8.21.1
1muj_B_85 - HE => SUBCLASS : 5.11.3
1muj_B_35 - HA => SUBCLASS : 4.1.2
1muj_B_35 - HA => SUBCLASS : 4.1.10
1muj_B_171 - HA => SUBCLASS : 4.4.1
1muj_B_9 - HA => SUBCLASS : 4.19.1

Loops not clustered in ArchDB

1muj_B_114 - AR
1muj_B_142 - AR
1muj_B_136 - AR
1muj_A_103 - AR
1muj_A_132 - AR
1muj_B_148 - HA
1muj_B_128 - HA
1muj_A_7 - HA
1muj_B_98 - HA
1muj_B_23 - HA
1muj_A_19 - HA
1muj_A_29 - HA
1muj_A_88 - HA
1muj_A_138 - HA
1muj_A_161 - HA
1muj_A_56 - HE
1muj_A_46 - HH
1muj_B_55 - HH
1muj_B_65 - HH
1muj_B_79 - HH

1d5m B - percentage of sequence identity: 63
1d9k C - percentage of sequence identity: 93
1d9k G - percentage of sequence identity: 93
1es0 A - percentage of sequence identity: 91
1f3j A - percentage of sequence identity: 91
1f3j D - percentage of sequence identity: 91
1fv1 B - percentage of sequence identity: 63
1i3r B - percentage of sequence identity: 66
1iao A - percentage of sequence identity: 89
1jl4 A - percentage of sequence identity: 93
1ktd B - percentage of sequence identity: 67
1lnu A - percentage of sequence identity: 100
1lnu B - percentage of sequence identity: 98
1lnu C - percentage of sequence identity: 100
1lnu E - percentage of sequence identity: 100
1lnu G - percentage of sequence identity: 100
1s9v A - percentage of sequence identity: 67
1s9v B - percentage of sequence identity: 75
1s9v D - percentage of sequence identity: 67
1u3h C - percentage of sequence identity: 96
1u3h G - percentage of sequence identity: 96
1uvq A - percentage of sequence identity: 66
1uvq B - percentage of sequence identity: 76
null nu - percentage of sequence identity: 0