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Information on 1n62
PDB: 1n62
Compound: carbon monoxide dehydrogenase small chain
Classification: OXIDOREDUCTASE
Entry date in PDB: 2002-12-18
Resolution [Å]: 1.09
R-Factor: 0.144


CHAIN: A
SWISS-PROT/TREMBL: P19921
   KEYWORD: 2Fe-2S    3D-structure    Iron-sulfur    Oxidoreductase    Plasmid   
EC: 1.2.99.2
SCOP: a.56.1.1 All alpha proteins    CO dehydrogenase ISP C-domain like    CO dehydrogenase ISP C-domain like    CO dehydrogenase ISP C-domain like    Carbon monoxide (CO) dehydrogenase iron-sulfur protein, C-domain    Oligotropha carboxidovorans (formerly Pseudomonas carboxydovorans)
SCOP: d.15.4.2 Alpha and beta proteins (a+b)    beta-Grasp (ubiquitin-like)    2Fe-2S ferredoxin-like    2Fe-2S ferredoxin domains from multidomain proteins    Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain    Oligotropha carboxidovorans (formerly Pseudomonas carboxydovorans)
GO:  electron transporter activity    iron ion binding    electron transport   


CHAIN: B
SWISS-PROT/TREMBL: P19919
   KEYWORD: 3D-structure    Copper    Metal-binding    Molybdenum    Oxidoreductase    Plasmid   
EC: 1.2.99.2
SCOP: d.41.1.1 Alpha and beta proteins (a+b)    alpha/beta-Hammerhead    CO dehydrogenase molybdoprotein N-domain-like    CO dehydrogenase molybdoprotein N-domain-like    Carbon monoxide (CO) dehydrogenase molybdoprotein, N-domain    Oligotropha carboxidovorans (formerly Pseudomonas carboxydovorans)
SCOP: d.133.1.1 Alpha and beta proteins (a+b)    Molybdenum cofactor-binding domain    Molybdenum cofactor-binding domain    Molybdenum cofactor-binding domain    Carbon monoxide (CO) dehydrogenase molybdoprotein    Oligotropha carboxidovorans (formerly Pseudomonas carboxydovorans)
GO:  oxidoreductase activity    electron transport   


CHAIN: C
SWISS-PROT/TREMBL: P19920
   KEYWORD: 3D-structure    FAD    Flavoprotein    Oxidoreductase    Plasmid   
EC: 1.2.99.2
SCOP: d.87.2.1 Alpha and beta proteins (a+b)    CO dehydrogenase flavoprotein C-domain-like    CO dehydrogenase flavoprotein C-terminal domain-like    CO dehydrogenase flavoprotein C-terminal domain-like    Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain    Oligotropha carboxidovorans (formerly Pseudomonas carboxydovorans)
SCOP: d.145.1.3 Alpha and beta proteins (a+b)    FAD-binding domain    FAD-binding domain    CO dehydrogenase flavoprotein N-terminal domain-like    Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain    Oligotropha carboxidovorans (formerly Pseudomonas carboxydovorans)
GO:  oxidoreductase activity    electron transport   


CHAIN: D
SWISS-PROT/TREMBL: P19921
   KEYWORD: 2Fe-2S    3D-structure    Iron-sulfur    Oxidoreductase    Plasmid   
EC: 1.2.99.2
SCOP: a.56.1.1 All alpha proteins    CO dehydrogenase ISP C-domain like    CO dehydrogenase ISP C-domain like    CO dehydrogenase ISP C-domain like    Carbon monoxide (CO) dehydrogenase iron-sulfur protein, C-domain    Oligotropha carboxidovorans (formerly Pseudomonas carboxydovorans)
SCOP: d.15.4.2 Alpha and beta proteins (a+b)    beta-Grasp (ubiquitin-like)    2Fe-2S ferredoxin-like    2Fe-2S ferredoxin domains from multidomain proteins    Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain    Oligotropha carboxidovorans (formerly Pseudomonas carboxydovorans)
GO:  electron transporter activity    iron ion binding    electron transport   


CHAIN: E
SWISS-PROT/TREMBL: P19919
   KEYWORD: 3D-structure    Copper    Metal-binding    Molybdenum    Oxidoreductase    Plasmid   
EC: 1.2.99.2
SCOP: d.41.1.1 Alpha and beta proteins (a+b)    alpha/beta-Hammerhead    CO dehydrogenase molybdoprotein N-domain-like    CO dehydrogenase molybdoprotein N-domain-like    Carbon monoxide (CO) dehydrogenase molybdoprotein, N-domain    Oligotropha carboxidovorans (formerly Pseudomonas carboxydovorans)
SCOP: d.133.1.1 Alpha and beta proteins (a+b)    Molybdenum cofactor-binding domain    Molybdenum cofactor-binding domain    Molybdenum cofactor-binding domain    Carbon monoxide (CO) dehydrogenase molybdoprotein    Oligotropha carboxidovorans (formerly Pseudomonas carboxydovorans)
GO:  oxidoreductase activity    electron transport   


CHAIN: F
SWISS-PROT/TREMBL: P19920
   KEYWORD: 3D-structure    FAD    Flavoprotein    Oxidoreductase    Plasmid   
EC: 1.2.99.2
SCOP: d.87.2.1 Alpha and beta proteins (a+b)    CO dehydrogenase flavoprotein C-domain-like    CO dehydrogenase flavoprotein C-terminal domain-like    CO dehydrogenase flavoprotein C-terminal domain-like    Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain    Oligotropha carboxidovorans (formerly Pseudomonas carboxydovorans)
SCOP: d.145.1.3 Alpha and beta proteins (a+b)    FAD-binding domain    FAD-binding domain    CO dehydrogenase flavoprotein N-terminal domain-like    Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain    Oligotropha carboxidovorans (formerly Pseudomonas carboxydovorans)
GO:  oxidoreductase activity    electron transport   
1n62 Image
Image Source: PDB

Stored Loops of 1n62

Loops in ArchDB40 clusters

1n62_B_301 - HE => SUBCLASS : 0.1.1
1n62_B_126 - HE => SUBCLASS : 0.1.2
1n62_B_279 - HE => SUBCLASS : 1.1.2
1n62_B_279 - HE => SUBCLASS : 1.1.5
1n62_B_301 - HE => SUBCLASS : 1.2.9
1n62_C_125 - HE => SUBCLASS : 2.1.3
1n62_C_125 - HE => SUBCLASS : 2.1.5
1n62_C_125 - HE => SUBCLASS : 2.2.5
1n62_C_14 - HE => SUBCLASS : 3.11.1
1n62_B_70 - HE => SUBCLASS : 3.13.2
1n62_B_456 - HE => SUBCLASS : 4.2.4
1n62_B_242 - HE => SUBCLASS : 6.1.1
1n62_B_532 - HE => SUBCLASS : 6.1.1
1n62_B_576 - HE => SUBCLASS : 6.1.1
1n62_B_499 - HA => SUBCLASS : 2.1.1
1n62_A_4 - HA => SUBCLASS : 2.1.1
1n62_A_51 - HA => SUBCLASS : 2.1.1
1n62_C_135 - HA => SUBCLASS : 2.2.2
1n62_B_169 - HA => SUBCLASS : 2.2.2
1n62_C_63 - HA => SUBCLASS : 2.3.1
1n62_C_152 - HA => SUBCLASS : 2.5.1
1n62_C_152 - HA => SUBCLASS : 2.6.1
1n62_B_430 - HA => SUBCLASS : 3.1.1
1n62_B_94 - HA => SUBCLASS : 3.1.1
1n62_B_507 - HA => SUBCLASS : 3.1.1
1n62_B_716 - HA => SUBCLASS : 3.1.1
1n62_B_221 - HA => SUBCLASS : 4.1.1
1n62_B_659 - HA => SUBCLASS : 4.1.2
1n62_B_314 - HA => SUBCLASS : 5.1.2
1n62_B_618 - EH => SUBCLASS : 0.1.6
1n62_B_62 - EH => SUBCLASS : 0.1.10
1n62_B_295 - EH => SUBCLASS : 1.1.4
1n62_C_224 - EH => SUBCLASS : 1.1.15
1n62_C_7 - EH => SUBCLASS : 2.1.3
1n62_B_117 - EH => SUBCLASS : 2.1.10
1n62_B_232 - EH => SUBCLASS : 4.18.4
1n62_C_69 - EH => SUBCLASS : 5.1.1
1n62_C_69 - EH => SUBCLASS : 5.1.2
1n62_A_13 - EH => SUBCLASS : 5.11.1
1n62_B_50 - AR => SUBCLASS : 3.9.1
1n62_B_110 - AR => SUBCLASS : 5.20.1
1n62_C_78 - HH => SUBCLASS : 1.1.1
1n62_C_78 - HH => SUBCLASS : 1.1.2
1n62_C_104 - HH => SUBCLASS : 2.3.10
1n62_B_392 - HH => SUBCLASS : 3.1.1

Loops in ArchDB95 clusters

1n62_B_618 - EH => SUBCLASS : 0.1.5
1n62_C_224 - EH => SUBCLASS : 0.1.7
1n62_B_62 - EH => SUBCLASS : 0.1.14
1n62_C_224 - EH => SUBCLASS : 1.1.23
1n62_C_7 - EH => SUBCLASS : 2.1.9
1n62_B_295 - EH => SUBCLASS : 2.2.1
1n62_C_69 - EH => SUBCLASS : 4.2.2
1n62_B_232 - EH => SUBCLASS : 4.3.3
1n62_A_13 - EH => SUBCLASS : 5.3.2
1n62_B_50 - AR => SUBCLASS : 3.4.1
1n62_B_645 - AR => SUBCLASS : 4.3.3
1n62_B_173 - AR => SUBCLASS : 4.35.1
1n62_B_110 - AR => SUBCLASS : 5.73.1
1n62_C_166 - AR => SUBCLASS : 6.17.1
1n62_B_368 - AR => SUBCLASS : 6.39.1
1n62_C_78 - HH => SUBCLASS : 1.1.1
1n62_B_443 - HH => SUBCLASS : 1.3.6
1n62_B_392 - HH => SUBCLASS : 3.1.1
1n62_B_301 - HE => SUBCLASS : 0.1.1
1n62_B_126 - HE => SUBCLASS : 0.1.3
1n62_B_279 - HE => SUBCLASS : 1.2.4
1n62_C_125 - HE => SUBCLASS : 2.1.3
1n62_B_189 - HE => SUBCLASS : 2.2.16
1n62_B_70 - HE => SUBCLASS : 3.7.3
1n62_C_14 - HE => SUBCLASS : 3.11.1
1n62_B_456 - HE => SUBCLASS : 4.2.4
1n62_B_456 - HE => SUBCLASS : 4.2.6
1n62_B_532 - HE => SUBCLASS : 6.1.1
1n62_B_242 - HE => SUBCLASS : 6.1.1
1n62_B_576 - HE => SUBCLASS : 6.1.1
1n62_B_576 - HE => SUBCLASS : 6.1.3
1n62_C_37 - HE => SUBCLASS : 6.64.1
1n62_A_4 - HA => SUBCLASS : 2.1.1
1n62_B_499 - HA => SUBCLASS : 2.1.1
1n62_A_51 - HA => SUBCLASS : 2.1.1
1n62_C_196 - HA => SUBCLASS : 2.1.7
1n62_B_169 - HA => SUBCLASS : 2.2.2
1n62_C_135 - HA => SUBCLASS : 2.2.2
1n62_C_63 - HA => SUBCLASS : 2.3.1
1n62_C_152 - HA => SUBCLASS : 2.4.1
1n62_C_152 - HA => SUBCLASS : 2.4.2
1n62_B_716 - HA => SUBCLASS : 3.1.1
1n62_B_430 - HA => SUBCLASS : 3.1.1
1n62_B_507 - HA => SUBCLASS : 3.1.1
1n62_B_94 - HA => SUBCLASS : 3.1.1
1n62_B_221 - HA => SUBCLASS : 4.1.1
1n62_B_659 - HA => SUBCLASS : 4.1.2
1n62_B_314 - HA => SUBCLASS : 5.1.1

Loops in ArchDB-EC clusters

1n62_B_392 - HH => SUBCLASS : 3.1.1

Loops not clustered in ArchDB

1n62_C_166 - AR
1n62_B_110 - AR
1n62_B_102 - AR
1n62_B_50 - AR
1n62_C_158 - AR
1n62_B_723 - AR
1n62_B_503 - AR
1n62_B_477 - AR
1n62_B_310 - AR
1n62_B_201 - AR
1n62_B_137 - AR
1n62_B_102 - AR
1n62_B_137 - AR
1n62_B_173 - AR
1n62_C_158 - AR
1n62_C_50 - AR
1n62_B_723 - AR
1n62_B_645 - AR
1n62_B_503 - AR
1n62_A_57 - AR
1n62_B_477 - AR
1n62_B_368 - AR
1n62_B_310 - AR
1n62_C_50 - AR
1n62_B_201 - AR
1n62_A_57 - AR
1n62_C_143 - EH
1n62_B_180 - EH
1n62_A_73 - EH
1n62_C_28 - EH
1n62_B_743 - EH
1n62_B_675 - EH
1n62_B_519 - EH
1n62_B_437 - EH
1n62_B_382 - EH
1n62_B_260 - EH
1n62_B_551 - EH
1n62_B_78 - EH
1n62_B_499 - HA
1n62_B_430 - HA
1n62_B_612 - HA
1n62_B_507 - HA
1n62_B_606 - HA
1n62_B_659 - HA
1n62_B_716 - HA
1n62_C_63 - HA
1n62_C_135 - HA
1n62_C_152 - HA
1n62_C_180 - HA
1n62_C_196 - HA
1n62_C_208 - HA
1n62_A_4 - HA
1n62_A_51 - HA
1n62_B_328 - HA
1n62_B_314 - HA
1n62_B_328 - HA
1n62_B_612 - HA
1n62_C_180 - HA
1n62_C_208 - HA
1n62_B_94 - HA
1n62_B_606 - HA
1n62_B_169 - HA
1n62_B_221 - HA
1n62_B_84 - HE
1n62_A_25 - HE
1n62_C_149 - HE
1n62_B_29 - HE
1n62_B_692 - HE
1n62_B_414 - HE
1n62_B_625 - HE
1n62_A_125 - HH
1n62_C_112 - HH
1n62_B_11 - HH
1n62_C_240 - HH
1n62_B_764 - HH
1n62_C_85 - HH
1n62_C_92 - HH
1n62_A_106 - HH
1n62_C_227 - HH
1n62_A_89 - HH

Homologous structures to 1n62 classified in ArchDB

1ffu B - percentage of sequence identity: 68
1ffu E - percentage of sequence identity: 68
1ffv B - percentage of sequence identity: 68
1ffv E - percentage of sequence identity: 68
1n5w B - percentage of sequence identity: 100
1n5w E - percentage of sequence identity: 100
1n60 B - percentage of sequence identity: 100
1n60 E - percentage of sequence identity: 100
1n61 B - percentage of sequence identity: 100
1n61 E - percentage of sequence identity: 100
1n62 B - percentage of sequence identity: 100
1n62 E - percentage of sequence identity: 100
1n63 B - percentage of sequence identity: 100
1n63 E - percentage of sequence identity: 100
1zxi B - percentage of sequence identity: 99
1zxi E - percentage of sequence identity: 99
null nu - percentage of sequence identity: 0