PDB: 1nd1 Compound: bap1 Classification: TOXIN Entry date in PDB: 2003-11-04 Resolution [Å]: 1.93 R-Factor: 0.191

CHAIN: A SWISS-PROT/TREMBL: P83512    KEYWORD: 3D-structure    Hydrolase    Metal-binding    Metalloprotease    Pyrrolidone carboxylic acid    Toxin    Zinc    EC: 3.4.24.- SCOP: d.92.1.9 Alpha and beta proteins (a+b)    Zincin-like    Metalloproteases ("zincins"), catalytic domain    Hemorrhagin    Snake venom metalloprotease    Terciopelo (Bothrops asper), bap1 GO:  metalloendopeptidase activity    metallopeptidase activity    zinc ion binding    proteolysis and peptidolysis

Image Source: PDB

Loops in ArchDB95 clusters

1nd1_A_176 - EH => SUBCLASS : 2.2.2
1nd1_A_123 - EH => SUBCLASS : 5.41.1
1nd1_A_16 - HH => SUBCLASS : 3.7.1
1nd1_A_26 - HE => SUBCLASS : 1.2.10

Loops in ArchDB-EC clusters

1nd1_A_16 - HH => SUBCLASS : 3.5.1

Loops not clustered in ArchDB

1nd1_A_94 - AR
1nd1_A_94 - AR
1nd1_A_49 - AR
1nd1_A_6 - AR
1nd1_A_6 - AR
1nd1_A_49 - AR
1nd1_A_10 - EH
1nd1_A_53 - EH
1nd1_A_109 - HA
1nd1_A_163 - HA
1nd1_A_109 - HA
1nd1_A_163 - HA
1nd1_A_133 - HE
1nd1_A_86 - HE
1nd1_A_71 - HH

1atl A - percentage of sequence identity: 60
1atl B - percentage of sequence identity: 60
1dth A - percentage of sequence identity: 60
1dth B - percentage of sequence identity: 60
1htd A - percentage of sequence identity: 60
1htd B - percentage of sequence identity: 60
2aig P - percentage of sequence identity: 61
3aig A - percentage of sequence identity: 61