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Information on 1ndd
PDB: 1ndd
Compound: ubiquitin-like protein nedd8
Classification: SIGNALING PROTEIN
Entry date in PDB: 1999-02-23
Resolution [Å]: 1.60
R-Factor: 0.219


CHAIN: A
SWISS-PROT/TREMBL: Q15843
   KEYWORD: 3D-structure    Ubl conjugation pathway   
SCOP: d.15.1.1 Alpha and beta proteins (a+b)    beta-Grasp (ubiquitin-like)    Ubiquitin-like    Ubiquitin-related    Nedd8    Human (Homo sapiens)
GO:  protein modification   


CHAIN: B
SWISS-PROT/TREMBL: Q15843
   KEYWORD: 3D-structure    Ubl conjugation pathway   
SCOP: d.15.1.1 Alpha and beta proteins (a+b)    beta-Grasp (ubiquitin-like)    Ubiquitin-like    Ubiquitin-related    Nedd8    Human (Homo sapiens)
GO:  protein modification   


CHAIN: C
SWISS-PROT/TREMBL: Q15843
   KEYWORD: 3D-structure    Ubl conjugation pathway   
SCOP: d.15.1.1 Alpha and beta proteins (a+b)    beta-Grasp (ubiquitin-like)    Ubiquitin-like    Ubiquitin-related    Nedd8    Human (Homo sapiens)
GO:  protein modification   


CHAIN: D
SWISS-PROT/TREMBL: Q15843
   KEYWORD: 3D-structure    Ubl conjugation pathway   
SCOP: d.15.1.1 Alpha and beta proteins (a+b)    beta-Grasp (ubiquitin-like)    Ubiquitin-like    Ubiquitin-related    Nedd8    Human (Homo sapiens)
GO:  protein modification   
1ndd Image
Image Source: PDB

Stored Loops of 1ndd

Loops in ArchDB95 clusters

1ndd_A_12 - EH => SUBCLASS : 6.2.1
1ndd_A_23 - HE => SUBCLASS : 6.1.1
1ndd_A_23 - HE => SUBCLASS : 6.1.2
1ndd_A_41 - HA => SUBCLASS : 2.1.1
1ndd_A_2 - HA => SUBCLASS : 3.1.1

Loops not clustered in ArchDB

1ndd_A_48 - AR

Homologous structures to 1ndd classified in ArchDB

1bt0 A - percentage of sequence identity: 85
1ndd A - percentage of sequence identity: 100
1ndd B - percentage of sequence identity: 100
1ndd C - percentage of sequence identity: 100
1ndd D - percentage of sequence identity: 100
1r4m I - percentage of sequence identity: 100
1r4m J - percentage of sequence identity: 100
1r4m K - percentage of sequence identity: 100
1r4m L - percentage of sequence identity: 100
1r4n I - percentage of sequence identity: 100
1r4n J - percentage of sequence identity: 100
1r4n K - percentage of sequence identity: 100
1r4n L - percentage of sequence identity: 100
1xt9 B - percentage of sequence identity: 100
2bkr B - percentage of sequence identity: 100