PDB: 1npe Compound: nidogen Classification: STRUCTURAL PROTEIN Entry date in PDB: 2003-08-12 Resolution [Å]: 2.30 R-Factor: 0.223

CHAIN: B SWISS-PROT/TREMBL: P02468    KEYWORD: 3D-structure    Basement membrane    Cell adhesion    Coiled coil    Extracellular matrix    Glycoprotein    Laminin EGF-like domain    Repeat    Signal    SCOP: g.3.11.2 Small proteins    Knottins (small inhibitors, toxins, lectins)    EGF/Laminin    Laminin-type module    Laminin gamma1 chain    Mouse (Mus musculus) SCOP: g.3.11.2 Small proteins    Knottins (small inhibitors, toxins, lectins)    EGF/Laminin    Laminin-type module    Laminin gamma1 chain    Mouse (Mus musculus) SCOP: g.3.11.2 Small proteins    Knottins (small inhibitors, toxins, lectins)    EGF/Laminin    Laminin-type module    Laminin gamma1 chain    Mouse (Mus musculus) GO:  extracellular matrix (sensu Metazoa)    structural molecule activity

Image Source: PDB

Loops in ArchDB40 clusters

1npe_A_1102 - HA => SUBCLASS : 2.2.9
1npe_A_1132 - HA => SUBCLASS : 4.1.1
1npe_A_1036 - HA => SUBCLASS : 4.1.1
1npe_A_1142 - HA => SUBCLASS : 4.1.1
1npe_A_1081 - HA => SUBCLASS : 4.1.1
1npe_A_993 - HA => SUBCLASS : 4.1.1
1npe_A_1092 - HA => SUBCLASS : 4.1.1
1npe_A_1004 - HA => SUBCLASS : 4.1.1
1npe_A_1142 - HA => SUBCLASS : 4.1.2
1npe_A_940 - HA => SUBCLASS : 4.1.16
1npe_A_1059 - HA => SUBCLASS : 6.14.1
1npe_A_1014 - HA => SUBCLASS : 6.14.1

Loops in ArchDB95 clusters

1npe_A_1110 - AR => SUBCLASS : 1.2.23
1npe_A_1102 - HA => SUBCLASS : 2.2.21
1npe_A_1036 - HA => SUBCLASS : 4.1.1
1npe_A_1132 - HA => SUBCLASS : 4.1.1
1npe_A_1142 - HA => SUBCLASS : 4.1.1
1npe_A_1081 - HA => SUBCLASS : 4.1.1
1npe_A_993 - HA => SUBCLASS : 4.1.1
1npe_A_1092 - HA => SUBCLASS : 4.1.1
1npe_A_1004 - HA => SUBCLASS : 4.1.1
1npe_A_940 - HA => SUBCLASS : 4.1.14
1npe_A_1059 - HA => SUBCLASS : 6.19.1
1npe_A_1014 - HA => SUBCLASS : 6.19.1

Loops not clustered in ArchDB

1npe_A_983 - AR
1npe_A_1026 - AR
1npe_A_1071 - AR
1npe_A_1152 - AR
1npe_A_914 - HA
1npe_A_961 - HA
1npe_A_971 - HA
1npe_A_1047 - HA
1npe_A_1123 - HA

1klo - - percentage of sequence identity: 100