PDB: 1o0w Compound: ribonuclease iii Classification: HYDROLASE Entry date in PDB: 2002-11-13 Resolution [Å]: 2.00 R-Factor: 0.195

CHAIN: A SWISS-PROT/TREMBL: Q9X0I6    KEYWORD: 3D-structure    Complete proteome    Endonuclease    Hydrolase    Nuclease    RNA-binding    EC: 3.1.26.3 SCOP: a.149.1.1 All alpha proteins    RNase III endonuclease catalytic domain    RNase III endonuclease catalytic domain    RNase III endonuclease catalytic domain    RNase III endonuclease catalytic domain    Thermotoga maritima SCOP: d.50.1.1 Alpha and beta proteins (a+b)    dsRBD-like    dsRNA-binding domain-like    Double-stranded RNA-binding domain (dsRBD)    RNase III, C-terminal domain    Thermotoga maritima GO:  intracellular    double-stranded RNA binding    ribonuclease III activity    RNA binding    RNA processing    CHAIN: B SWISS-PROT/TREMBL: Q9X0I6    KEYWORD: 3D-structure    Complete proteome    Endonuclease    Hydrolase    Nuclease    RNA-binding    EC: 3.1.26.3 SCOP: a.149.1.1 All alpha proteins    RNase III endonuclease catalytic domain    RNase III endonuclease catalytic domain    RNase III endonuclease catalytic domain    RNase III endonuclease catalytic domain    Thermotoga maritima SCOP: d.50.1.1 Alpha and beta proteins (a+b)    dsRBD-like    dsRNA-binding domain-like    Double-stranded RNA-binding domain (dsRBD)    RNase III, C-terminal domain    Thermotoga maritima GO:  intracellular    double-stranded RNA binding    ribonuclease III activity    RNA binding    RNA processing

Image Source: PDB

Loops in ArchDB40 clusters

1o0w_A_186 - HA => SUBCLASS : 6.10.1
1o0w_A_78 - HH => SUBCLASS : 1.1.5
1o0w_A_78 - HH => SUBCLASS : 1.1.24
1o0w_A_91 - HH => SUBCLASS : 1.3.1
1o0w_A_23 - HH => SUBCLASS : 2.1.1
1o0w_A_51 - HH => SUBCLASS : 2.3.3
1o0w_A_103 - HH => SUBCLASS : 4.8.1
1o0w_A_3 - HH => SUBCLASS : 6.9.1

Loops in ArchDB95 clusters

1o0w_A_78 - HH => SUBCLASS : 1.1.2
1o0w_A_78 - HH => SUBCLASS : 1.1.14
1o0w_A_91 - HH => SUBCLASS : 1.3.1
1o0w_A_23 - HH => SUBCLASS : 2.1.1
1o0w_A_51 - HH => SUBCLASS : 2.3.4
1o0w_A_103 - HH => SUBCLASS : 4.6.3
1o0w_A_3 - HH => SUBCLASS : 6.14.1
1o0w_A_186 - HA => SUBCLASS : 5.8.2
1o0w_A_186 - HA => SUBCLASS : 6.29.1

Loops in ArchDB-EC clusters

1o0w_A_3 - HH => SUBCLASS : 6.21.1

Loops not clustered in ArchDB

1o0w_A_210 - EH
1o0w_A_200 - HA
1o0w_A_186 - HA
1o0w_A_200 - HA
1o0w_A_169 - HE
1o0w_A_33 - HH
1o0w_A_111 - HH
1o0w_A_122 - HH
1o0w_A_142 - HH

1o0w A - percentage of sequence identity: 100
1o0w B - percentage of sequence identity: 100