PDB: 1ono Compound: 1-deoxy-d-xylulose 5-phosphate reductoisomerase Classification: OXIDOREDUCTASE Entry date in PDB: 2003-03-18 Resolution [Å]: 2.50 R-Factor: 0.216

CHAIN: A SWISS-PROT/TREMBL: P45568    KEYWORD: 3D-structure    Cobalt    Complete proteome    Isoprene biosynthesis    Magnesium    Manganese    NADP    Oxidoreductase    EC: 1.1.1.267 SCOP: a.69.3.1 All alpha proteins    Left-handed superhelix    1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain    1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain    1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain    Escherichia coli SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    1-deoxy-D-xylulose-5-phosphate reductoisomerase    Escherichia coli SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    1-deoxy-D-xylulose-5-phosphate reductoisomerase    Escherichia coli SCOP: d.81.1.3 Alpha and beta proteins (a+b)    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    Dihydrodipicolinate reductase-like    1-deoxy-D-xylulose-5-phosphate reductoisomerase    Escherichia coli GO:  catalytic activity    isoprenoid biosynthesis    CHAIN: B SWISS-PROT/TREMBL: P45568    KEYWORD: 3D-structure    Cobalt    Complete proteome    Isoprene biosynthesis    Magnesium    Manganese    NADP    Oxidoreductase    EC: 1.1.1.267 SCOP: a.69.3.1 All alpha proteins    Left-handed superhelix    1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain    1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain    1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain    Escherichia coli SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    1-deoxy-D-xylulose-5-phosphate reductoisomerase    Escherichia coli SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    1-deoxy-D-xylulose-5-phosphate reductoisomerase    Escherichia coli SCOP: d.81.1.3 Alpha and beta proteins (a+b)    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    Dihydrodipicolinate reductase-like    1-deoxy-D-xylulose-5-phosphate reductoisomerase    Escherichia coli GO:  catalytic activity    isoprenoid biosynthesis

Image Source: PDB

Loops in ArchDB40 clusters

1ono_A_12 - HE => SUBCLASS : 0.1.53
1ono_A_107 - HE => SUBCLASS : 1.1.1
1ono_A_132 - HE => SUBCLASS : 1.1.1
1ono_A_107 - HE => SUBCLASS : 2.1.2
1ono_A_39 - HE => SUBCLASS : 3.1.5
1ono_A_82 - HE => SUBCLASS : 5.8.1
1ono_A_226 - HE => SUBCLASS : 6.1.1
1ono_A_256 - HA => SUBCLASS : 4.2.1
1ono_A_53 - EH => SUBCLASS : 2.1.1
1ono_A_119 - EH => SUBCLASS : 2.1.28
1ono_A_145 - EH => SUBCLASS : 2.4.1
1ono_A_28 - EH => SUBCLASS : 3.36.1
1ono_A_2 - EH => SUBCLASS : 4.14.1
1ono_A_316 - HH => SUBCLASS : 1.4.9
1ono_A_217 - HH => SUBCLASS : 1.6.1
1ono_A_151 - HH => SUBCLASS : 2.1.1
1ono_A_151 - HH => SUBCLASS : 2.1.4

Loops in ArchDB95 clusters

1ono_A_53 - EH => SUBCLASS : 2.1.1
1ono_A_119 - EH => SUBCLASS : 2.1.27
1ono_A_119 - EH => SUBCLASS : 2.1.40
1ono_A_145 - EH => SUBCLASS : 2.3.1
1ono_A_2 - EH => SUBCLASS : 4.7.1
1ono_A_151 - HH => SUBCLASS : 2.1.1
1ono_A_12 - HE => SUBCLASS : 0.1.20
1ono_A_107 - HE => SUBCLASS : 1.1.1
1ono_A_132 - HE => SUBCLASS : 1.1.1
1ono_A_132 - HE => SUBCLASS : 2.5.1
1ono_A_39 - HE => SUBCLASS : 3.1.2
1ono_A_82 - HE => SUBCLASS : 4.11.5
1ono_A_59 - HE => SUBCLASS : 4.19.2
1ono_A_59 - HE => SUBCLASS : 5.18.1
1ono_A_226 - HE => SUBCLASS : 6.1.1
1ono_A_256 - HA => SUBCLASS : 3.1.2

Loops not clustered in ArchDB

1ono_A_246 - AR
1ono_A_77 - EH
1ono_A_96 - EH
1ono_A_178 - EH
1ono_A_267 - EH
1ono_A_162 - HE
1ono_A_126 - HH
1ono_A_277 - HH
1ono_A_329 - HH
1ono_A_355 - HH

1jvs A - percentage of sequence identity: 100
1jvs B - percentage of sequence identity: 100
1k5h A - percentage of sequence identity: 100
1k5h B - percentage of sequence identity: 100
1k5h C - percentage of sequence identity: 100
1onn A - percentage of sequence identity: 100
1onn B - percentage of sequence identity: 100
1ono A - percentage of sequence identity: 100
1ono B - percentage of sequence identity: 100
1onp A - percentage of sequence identity: 100
1onp B - percentage of sequence identity: 100
1q0h A - percentage of sequence identity: 100
1q0l A - percentage of sequence identity: 100
1q0q A - percentage of sequence identity: 100
1q0q B - percentage of sequence identity: 100
1t1r A - percentage of sequence identity: 100
1t1r B - percentage of sequence identity: 100
1t1s A - percentage of sequence identity: 100
1t1s B - percentage of sequence identity: 100