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Information on 1pdn
PDB: 1pdn
Compound: prd paired domain
Classification: COMPLEX (GENE REGULATING PROTEIN/DNA)
Entry date in PDB: 1995-07-31
Resolution [Å]: 2.50
R-Factor: 0.234


CHAIN: C
SWISS-PROT/TREMBL: P06601
   KEYWORD: 3D-structure    Alternative splicing    Developmental protein    DNA-binding    Homeobox    Nuclear protein    Pair-rule protein    Paired box    Repeat    Transcription regulation   
SCOP: a.4.1.5 All alpha proteins    DNA/RNA-binding 3-helical bundle    Homeodomain-like    Paired domain    Paired protein (prd)    Fruit fly (Drosophila melanogaster)
GO:  nucleus    DNA binding    transcription factor activity    development    regulation of transcription    regulation of transcription, DNA-dependent   
1pdn Image
Image Source: PDB

Stored Loops of 1pdn

Loops in ArchDB40 clusters

1pdn_C_36 - HH => SUBCLASS : 3.1.1
1pdn_C_20 - HH => SUBCLASS : 3.3.1

Loops in ArchDB95 clusters

1pdn_C_20 - HH => SUBCLASS : 3.2.1
1pdn_C_96 - HH => SUBCLASS : 10.18.1

Loops not clustered in ArchDB

1pdn_C_11 - EH
1pdn_C_3 - HA
1pdn_C_47 - HH
1pdn_C_80 - HH

Homologous structures to 1pdn classified in ArchDB

1k78 E - percentage of sequence identity: 66
1k78 I - percentage of sequence identity: 66
1mdm A - percentage of sequence identity: 66