PDB: 1pfo Compound: perfringolysin o Classification: TOXIN Entry date in PDB: 1998-08-05 Resolution [Å]: 2.20 R-Factor: 0.211

CHAIN: - SWISS-PROT/TREMBL: P19995    KEYWORD: 3D-structure    Complete proteome    Cytolysis    Hemolysis    Lipid-binding    Signal    Toxin    SCOP: f.9.1.1 Membrane and cell surface proteins and peptides    Perfringolysin    Perfringolysin    Perfringolysin    Perfringolysin    Clostridium perfringens GO:  cholesterol binding    pathogenesis

Image Source: PDB

Loops in ArchDB40 clusters

1pfo_*_338 - HE => SUBCLASS : 0.1.15
1pfo_*_211 - HE => SUBCLASS : 2.4.2
1pfo_*_151 - HE => SUBCLASS : 5.36.1
1pfo_*_481 - HA => SUBCLASS : 2.2.1
1pfo_*_404 - HA => SUBCLASS : 4.2.2
1pfo_*_333 - EH => SUBCLASS : 2.1.1
1pfo_*_178 - EH => SUBCLASS : 4.25.1
1pfo_*_178 - EH => SUBCLASS : 4.25.2
1pfo_*_392 - AR => SUBCLASS : 3.8.1
1pfo_*_189 - HH => SUBCLASS : 3.1.1
1pfo_*_200 - HH => SUBCLASS : 3.2.3

Loops in ArchDB95 clusters

1pfo_*_74 - AR => SUBCLASS : 1.2.16
1pfo_*_392 - AR => SUBCLASS : 5.1.1
1pfo_*_189 - HH => SUBCLASS : 3.1.1
1pfo_*_200 - HH => SUBCLASS : 3.1.4
1pfo_*_200 - HH => SUBCLASS : 3.1.12
1pfo_*_189 - HH => SUBCLASS : 3.4.1
1pfo_*_338 - HE => SUBCLASS : 0.1.39
1pfo_*_211 - HE => SUBCLASS : 2.4.5
1pfo_*_151 - HE => SUBCLASS : 5.64.1
1pfo_*_481 - HA => SUBCLASS : 2.2.1
1pfo_*_404 - HA => SUBCLASS : 5.1.2
1pfo_*_404 - HA => SUBCLASS : 5.1.4

Loops not clustered in ArchDB

1pfo_*_55 - AR
1pfo_*_439 - AR
1pfo_*_421 - AR
1pfo_*_377 - AR
1pfo_*_359 - AR
1pfo_*_350 - AR
1pfo_*_174 - AR
1pfo_*_92 - AR
1pfo_*_469 - AR
1pfo_*_143 - EH
1pfo_*_220 - EH
1pfo_*_265 - EH
1pfo_*_107 - EH
1pfo_*_449 - HA
1pfo_*_316 - HA
1pfo_*_129 - HA
1pfo_*_66 - HA
1pfo_*_307 - HE
1pfo_*_251 - HE
1pfo_*_112 - HE
1pfo_*_38 - HE
1pfo_*_241 - HH
1pfo_*_290 - HH

1m3i A - percentage of sequence identity: 100
1m3i B - percentage of sequence identity: 100
1m3i C - percentage of sequence identity: 100
1m3i D - percentage of sequence identity: 100
1m3j A - percentage of sequence identity: 100
1m3j B - percentage of sequence identity: 100
2bk1 A - percentage of sequence identity: 99
2bk2 A - percentage of sequence identity: 97