PDB: 1pfv Compound: methionyl-trna synthetase Classification: LIGASE Entry date in PDB: 2004-02-17 Resolution [Å]: 1.70 R-Factor: 0.186

CHAIN: A SWISS-PROT/TREMBL: P00959    KEYWORD: 3D-structure    Aminoacyl-tRNA synthetase    ATP-binding    Complete proteome    Ligase    Metal-binding    Protein biosynthesis    RNA-binding    tRNA-binding    Zinc    EC: 6.1.1.10 SCOP: a.27.1.1 All alpha proteins    Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases    Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases    Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases    Methionyl-tRNA synthetase (MetRS)    Escherichia coli SCOP: c.26.1.1 Alpha and beta proteins (a/b)    Adenine nucleotide alpha hydrolase-like    Nucleotidylyl transferase    Class I aminoacyl-tRNA synthetases (RS), catalytic domain    Methionyl-tRNA synthetase (MetRS)    Escherichia coli SCOP: c.26.1.1 Alpha and beta proteins (a/b)    Adenine nucleotide alpha hydrolase-like    Nucleotidylyl transferase    Class I aminoacyl-tRNA synthetases (RS), catalytic domain    Methionyl-tRNA synthetase (MetRS)    Escherichia coli SCOP: g.41.1.1 Small proteins    Rubredoxin-like    Methionyl-tRNA synthetase (MetRS), Zn-domain    Methionyl-tRNA synthetase (MetRS), Zn-domain    Methionyl-tRNA synthetase (MetRS), Zn-domain    Escherichia coli GO:  cytoplasm    ATP binding    cysteine-tRNA ligase activity    methionine-tRNA ligase activity    tRNA binding    tRNA ligase activity    cysteinyl-tRNA aminoacylation    methionyl-tRNA aminoacylation    protein biosynthesis    tRNA aminoacylation for protein translation

Image Source: PDB

Loops in ArchDB40 clusters

1pfv_A_22 - HE => SUBCLASS : 1.1.1
1pfv_A_22 - HE => SUBCLASS : 1.1.3
1pfv_A_100 - HE => SUBCLASS : 2.4.3
1pfv_A_304 - HE => SUBCLASS : 6.8.1
1pfv_A_119 - HA => SUBCLASS : 4.1.18
1pfv_A_370 - EH => SUBCLASS : 1.1.3
1pfv_A_288 - EH => SUBCLASS : 1.3.1
1pfv_A_229 - AR => SUBCLASS : 1.1.1
1pfv_A_134 - AR => SUBCLASS : 5.3.1
1pfv_A_470 - HH => SUBCLASS : 1.2.37
1pfv_A_425 - HH => SUBCLASS : 2.2.1
1pfv_A_425 - HH => SUBCLASS : 2.2.2
1pfv_A_252 - HH => SUBCLASS : 2.2.6
1pfv_A_56 - HH => SUBCLASS : 3.1.1

Loops in ArchDB95 clusters

1pfv_A_370 - EH => SUBCLASS : 1.1.4
1pfv_A_288 - EH => SUBCLASS : 1.2.3
1pfv_A_229 - AR => SUBCLASS : 1.2.10
1pfv_A_134 - AR => SUBCLASS : 3.2.1
1pfv_A_134 - AR => SUBCLASS : 3.2.5
1pfv_A_425 - HH => SUBCLASS : 2.2.2
1pfv_A_425 - HH => SUBCLASS : 2.2.7
1pfv_A_252 - HH => SUBCLASS : 2.2.17
1pfv_A_56 - HH => SUBCLASS : 3.1.1
1pfv_A_22 - HE => SUBCLASS : 1.1.1
1pfv_A_22 - HE => SUBCLASS : 2.1.1
1pfv_A_100 - HE => SUBCLASS : 2.4.14
1pfv_A_69 - HE => SUBCLASS : 5.53.1
1pfv_A_304 - HE => SUBCLASS : 6.28.1
1pfv_A_119 - HA => SUBCLASS : 4.1.24
1pfv_A_141 - HA => SUBCLASS : 6.2.2

Loops not clustered in ArchDB

1pfv_A_153 - AR
1pfv_A_171 - AR
1pfv_A_319 - AR
1pfv_A_326 - EH
1pfv_A_248 - EH
1pfv_A_183 - EH
1pfv_A_93 - EH
1pfv_A_44 - EH
1pfv_A_6 - EH
1pfv_A_232 - HA
1pfv_A_352 - HE
1pfv_A_276 - HE
1pfv_A_212 - HE
1pfv_A_460 - HH
1pfv_A_437 - HH
1pfv_A_415 - HH
1pfv_A_390 - HH
1pfv_A_374 - HH
1pfv_A_343 - HH
1pfv_A_298 - HH
1pfv_A_198 - HH
1pfv_A_496 - HH

1mea - - percentage of sequence identity: 100
1med - - percentage of sequence identity: 100
1p7p A - percentage of sequence identity: 100
1pfu A - percentage of sequence identity: 100
1pfw A - percentage of sequence identity: 100
1pfy A - percentage of sequence identity: 100
1pg0 A - percentage of sequence identity: 100
1pg2 A - percentage of sequence identity: 100
1qqt A - percentage of sequence identity: 99