PDB: 1ppr Compound: peridinin-chlorophyll protein Classification: LIGHT-HARVESTING PROTEIN Entry date in PDB: 1997-08-20 Resolution [Å]: 2.00 R-Factor: 0.179

CHAIN: M SWISS-PROT/TREMBL: P80484    KEYWORD: 3D-structure    Chlorophyll    Chloroplast    Light-harvesting polypeptide    Multigene family    Repeat    Transit peptide    SCOP: a.131.1.1 All alpha proteins    Peridinin-chlorophyll protein    Peridinin-chlorophyll protein    Peridinin-chlorophyll protein    Peridinin-chlorophyll protein    Dinoflagellate (Amphidinium carterae) SCOP: a.131.1.1 All alpha proteins    Peridinin-chlorophyll protein    Peridinin-chlorophyll protein    Peridinin-chlorophyll protein    Peridinin-chlorophyll protein    Dinoflagellate (Amphidinium carterae) GO:   CHAIN: N SWISS-PROT/TREMBL: P80484    KEYWORD: 3D-structure    Chlorophyll    Chloroplast    Light-harvesting polypeptide    Multigene family    Repeat    Transit peptide    SCOP: a.131.1.1 All alpha proteins    Peridinin-chlorophyll protein    Peridinin-chlorophyll protein    Peridinin-chlorophyll protein    Peridinin-chlorophyll protein    Dinoflagellate (Amphidinium carterae) SCOP: a.131.1.1 All alpha proteins    Peridinin-chlorophyll protein    Peridinin-chlorophyll protein    Peridinin-chlorophyll protein    Peridinin-chlorophyll protein    Dinoflagellate (Amphidinium carterae) GO:   CHAIN: O SWISS-PROT/TREMBL: P80484    KEYWORD: 3D-structure    Chlorophyll    Chloroplast    Light-harvesting polypeptide    Multigene family    Repeat    Transit peptide    SCOP: a.131.1.1 All alpha proteins    Peridinin-chlorophyll protein    Peridinin-chlorophyll protein    Peridinin-chlorophyll protein    Peridinin-chlorophyll protein    Dinoflagellate (Amphidinium carterae) SCOP: a.131.1.1 All alpha proteins    Peridinin-chlorophyll protein    Peridinin-chlorophyll protein    Peridinin-chlorophyll protein    Peridinin-chlorophyll protein    Dinoflagellate (Amphidinium carterae) GO:

Image Source: PDB

Loops in ArchDB40 clusters

1ppr_M_200 - HH => SUBCLASS : 2.1.1
1ppr_M_244 - HH => SUBCLASS : 2.1.1
1ppr_M_37 - HH => SUBCLASS : 2.1.1
1ppr_M_82 - HH => SUBCLASS : 2.1.1
1ppr_M_244 - HH => SUBCLASS : 2.1.2
1ppr_M_280 - HH => SUBCLASS : 2.1.3
1ppr_M_119 - HH => SUBCLASS : 2.1.3
1ppr_M_244 - HH => SUBCLASS : 2.1.6
1ppr_M_263 - HH => SUBCLASS : 2.1.10
1ppr_M_263 - HH => SUBCLASS : 2.3.6
1ppr_M_101 - HH => SUBCLASS : 2.3.6

Loops in ArchDB95 clusters

1ppr_M_280 - HH => SUBCLASS : 2.1.1
1ppr_M_200 - HH => SUBCLASS : 2.1.1
1ppr_M_37 - HH => SUBCLASS : 2.1.1
1ppr_M_244 - HH => SUBCLASS : 2.1.1
1ppr_M_82 - HH => SUBCLASS : 2.1.1
1ppr_M_263 - HH => SUBCLASS : 2.1.1
1ppr_M_244 - HH => SUBCLASS : 2.1.2
1ppr_M_82 - HH => SUBCLASS : 2.1.2
1ppr_M_119 - HH => SUBCLASS : 2.3.1
1ppr_M_280 - HH => SUBCLASS : 2.3.1
1ppr_M_263 - HH => SUBCLASS : 2.3.5
1ppr_M_101 - HH => SUBCLASS : 2.3.5

Loops not clustered in ArchDB

1ppr_M_2 - HH
1ppr_M_56 - HH
1ppr_M_129 - HH
1ppr_M_165 - HH
1ppr_M_219 - HH

1ppr M - percentage of sequence identity: 100
1ppr N - percentage of sequence identity: 100
1ppr O - percentage of sequence identity: 100