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Information on 1qhd
PDB: 1qhd
Compound: viral capsid vp6
Classification: VIRUS/VIRAL PROTEIN
Entry date in PDB: 2001-04-13
Resolution [Å]: 1.95
R-Factor: 0.188


CHAIN: A
SWISS-PROT/TREMBL: P04509
   KEYWORD: 3D-structure    Coat protein   
SCOP: a.115.1.2 All alpha proteins    A virus capsid protein alpha-helical domain    A virus capsid protein alpha-helical domain    vp6, the major capsid protein of group A rotavirus    vp6, the major capsid protein of group A rotavirus    Bovine rotavirus
SCOP: a.115.1.2 All alpha proteins    A virus capsid protein alpha-helical domain    A virus capsid protein alpha-helical domain    vp6, the major capsid protein of group A rotavirus    vp6, the major capsid protein of group A rotavirus    Bovine rotavirus
SCOP: b.19.1.1 All beta proteins    Viral protein domain    Viral protein domain    Top domain of virus capsid protein    vp6, the major capsid protein of group A rotavirus    Bovine rotavirus
GO:  viral capsid    structural molecule activity   
1qhd Image
Image Source: PDB

Stored Loops of 1qhd

Loops in ArchDB40 clusters

1qhd_A_28 - HE => SUBCLASS : 2.7.1
1qhd_A_134 - HE => SUBCLASS : 3.2.1
1qhd_A_134 - HE => SUBCLASS : 5.9.1
1qhd_A_158 - HA => SUBCLASS : 5.2.2
1qhd_A_236 - HA => SUBCLASS : 5.2.2

Loops in ArchDB95 clusters

1qhd_A_28 - HE => SUBCLASS : 3.8.1
1qhd_A_134 - HE => SUBCLASS : 5.10.1
1qhd_A_158 - HA => SUBCLASS : 5.2.2
1qhd_A_236 - HA => SUBCLASS : 5.2.2

Loops not clustered in ArchDB

1qhd_A_150 - AR
1qhd_A_187 - AR
1qhd_A_205 - AR
1qhd_A_246 - AR
1qhd_A_251 - AR
1qhd_A_268 - AR
1qhd_A_57 - EH
1qhd_A_317 - EH
1qhd_A_278 - EH
1qhd_A_45 - HA
1qhd_A_257 - HA
1qhd_A_177 - HA
1qhd_A_302 - HE
1qhd_A_2 - HH
1qhd_A_75 - HH
1qhd_A_114 - HH
1qhd_A_342 - HH
1qhd_A_367 - HH

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