Information on 1qhd |
PDB: 1qhd Compound: viral capsid vp6 Classification: VIRUS/VIRAL PROTEIN Entry date in PDB: 2001-04-13 Resolution [Å]: 1.95 R-Factor: 0.188 |
CHAIN: A SWISS-PROT/TREMBL:
P04509
KEYWORD: 3D-structure Coat protein SCOP: a.115.1.2 All alpha proteins A virus capsid protein alpha-helical domain A virus capsid protein alpha-helical domain vp6, the major capsid protein of group A rotavirus vp6, the major capsid protein of group A rotavirus Bovine rotavirus SCOP: a.115.1.2 All alpha proteins A virus capsid protein alpha-helical domain A virus capsid protein alpha-helical domain vp6, the major capsid protein of group A rotavirus vp6, the major capsid protein of group A rotavirus Bovine rotavirus SCOP: b.19.1.1 All beta proteins Viral protein domain Viral protein domain Top domain of virus capsid protein vp6, the major capsid protein of group A rotavirus Bovine rotavirus GO: viral capsid structural molecule activity |
Image Source: PDB |
Stored Loops of 1qhd |
Loops in ArchDB40 clusters
1qhd_A_28 - HE => SUBCLASS : 2.7.1
1qhd_A_134 - HE => SUBCLASS : 3.2.1
1qhd_A_134 - HE => SUBCLASS : 5.9.1
1qhd_A_158 - HA => SUBCLASS : 5.2.2
1qhd_A_236 - HA => SUBCLASS : 5.2.2
Loops in ArchDB95 clusters
1qhd_A_28 - HE => SUBCLASS : 3.8.1
1qhd_A_134 - HE => SUBCLASS : 5.10.1
1qhd_A_158 - HA => SUBCLASS : 5.2.2
1qhd_A_236 - HA => SUBCLASS : 5.2.2
Loops not clustered in ArchDB
1qhd_A_150 - AR
1qhd_A_187 - AR
1qhd_A_205 - AR
1qhd_A_246 - AR
1qhd_A_251 - AR
1qhd_A_268 - AR
1qhd_A_57 - EH
1qhd_A_317 - EH
1qhd_A_278 - EH
1qhd_A_45 - HA
1qhd_A_257 - HA
1qhd_A_177 - HA
1qhd_A_302 - HE
1qhd_A_2 - HH
1qhd_A_75 - HH
1qhd_A_114 - HH
1qhd_A_342 - HH
1qhd_A_367 - HH