PDB: 1qht Compound: DNA polymerase Classification: TRANSFERASE Entry date in PDB: 2000-05-26 Resolution [Å]: 2.10 R-Factor: 0.245

CHAIN: A SWISS-PROT/TREMBL: Q56366    KEYWORD: 3D-structure    DNA replication    DNA-binding    DNA-directed DNA polymerase    Transferase    EC: 2.7.7.7 SCOP: c.55.3.5 Alpha and beta proteins (a/b)    Ribonuclease H-like motif    Ribonuclease H-like    DnaQ-like 3'-5' exonuclease    Exonuclease domain of family B DNA polymerases    Archaeon Thermococcus sp., 9on-7 SCOP: e.8.1.1 Multi-domain proteins (alpha and beta)    DNA/RNA polymerases    DNA/RNA polymerases    DNA polymerase I    Family B DNA polymerase    Archaeon Thermococcus sp., 9on-7 GO:  nucleus    3'-5' exonuclease activity    DNA binding    DNA-directed DNA polymerase activity    nucleotide binding    DNA replication

Image Source: PDB

Loops in ArchDB95 clusters

1qht_A_205 - EH => SUBCLASS : 1.4.5
1qht_A_181 - EH => SUBCLASS : 2.1.3
1qht_A_78 - EH => SUBCLASS : 2.1.11
1qht_A_37 - EH => SUBCLASS : 2.3.11
1qht_A_543 - EH => SUBCLASS : 4.14.1
1qht_A_61 - AR => SUBCLASS : 2.1.11
1qht_A_247 - AR => SUBCLASS : 3.6.6
1qht_A_247 - AR => SUBCLASS : 4.2.3
1qht_A_341 - HH => SUBCLASS : 2.1.37
1qht_A_617 - HH => SUBCLASS : 2.5.1
1qht_A_448 - HH => SUBCLASS : 3.3.1
1qht_A_349 - HH => SUBCLASS : 9.25.1
1qht_A_507 - HE => SUBCLASS : 1.1.1
1qht_A_48 - HE => SUBCLASS : 1.3.1
1qht_A_48 - HE => SUBCLASS : 1.3.5
1qht_A_48 - HE => SUBCLASS : 1.3.6
1qht_A_507 - HE => SUBCLASS : 2.1.1
1qht_A_507 - HE => SUBCLASS : 2.1.5
1qht_A_187 - HE => SUBCLASS : 3.3.2
1qht_A_92 - HE => SUBCLASS : 3.6.1
1qht_A_55 - HA => SUBCLASS : 2.1.1
1qht_A_67 - HA => SUBCLASS : 2.1.3
1qht_A_157 - HA => SUBCLASS : 2.2.1
1qht_A_535 - HA => SUBCLASS : 2.2.2
1qht_A_240 - HA => SUBCLASS : 2.6.1
1qht_A_593 - HA => SUBCLASS : 3.1.2

Loops in ArchDB-EC clusters

1qht_A_448 - HH => SUBCLASS : 3.4.2

Loops not clustered in ArchDB

1qht_A_25 - AR
1qht_A_61 - AR
1qht_A_247 - AR
1qht_A_25 - AR
1qht_A_714 - EH
1qht_A_604 - EH
1qht_A_440 - EH
1qht_A_397 - EH
1qht_A_256 - EH
1qht_A_106 - EH
1qht_A_55 - HA
1qht_A_13 - HA
1qht_A_2 - HA
1qht_A_701 - HA
1qht_A_137 - HA
1qht_A_157 - HA
1qht_A_701 - HA
1qht_A_593 - HA
1qht_A_578 - HA
1qht_A_535 - HA
1qht_A_431 - HA
1qht_A_67 - HA
1qht_A_240 - HA
1qht_A_168 - HA
1qht_A_431 - HA
1qht_A_168 - HA
1qht_A_137 - HA
1qht_A_13 - HA
1qht_A_2 - HA
1qht_A_578 - HA
1qht_A_215 - HE
1qht_A_374 - HE
1qht_A_408 - HE
1qht_A_553 - HE
1qht_A_677 - HE
1qht_A_116 - HE
1qht_A_292 - HH
1qht_A_275 - HH
1qht_A_260 - HH
1qht_A_473 - HH
1qht_A_636 - HH
1qht_A_731 - HH
1qht_A_737 - HH
1qht_A_493 - HH
1qht_A_305 - HH

1qqc A - percentage of sequence identity: 88
1wn7 A - percentage of sequence identity: 90
1wns A - percentage of sequence identity: 90