PDB: 1qmh Compound: RNA 3'-terminal phosphate cyclase Classification: RNA 3'-TERMINAL PHOSPHATE CYCLASE Entry date in PDB: 2000-01-11 Resolution [Å]: 2.10 R-Factor: 0.207

CHAIN: A SWISS-PROT/TREMBL: P46849    KEYWORD: 3D-structure    Complete proteome    Ligase    EC: 6.5.1.4 SCOP: c.47.2.1 Alpha and beta proteins (a/b)    Thioredoxin fold    RNA 3'-terminal phosphate cyclase, RPTC, insert domain    RNA 3'-terminal phosphate cyclase, RPTC, insert domain    RNA 3'-terminal phosphate cyclase, RPTC, insert domain    Escherichia coli SCOP: d.68.2.1 Alpha and beta proteins (a+b)    IF3-like    EPT/RTPC-like    RNA 3'-terminal phosphate cyclase, RPTC    RNA 3'-terminal phosphate cyclase, RPTC    Escherichia coli SCOP: d.68.2.1 Alpha and beta proteins (a+b)    IF3-like    EPT/RTPC-like    RNA 3'-terminal phosphate cyclase, RPTC    RNA 3'-terminal phosphate cyclase, RPTC    Escherichia coli GO:  RNA-3'-phosphate cyclase activity    CHAIN: B SWISS-PROT/TREMBL: P46849    KEYWORD: 3D-structure    Complete proteome    Ligase    EC: 6.5.1.4 SCOP: c.47.2.1 Alpha and beta proteins (a/b)    Thioredoxin fold    RNA 3'-terminal phosphate cyclase, RPTC, insert domain    RNA 3'-terminal phosphate cyclase, RPTC, insert domain    RNA 3'-terminal phosphate cyclase, RPTC, insert domain    Escherichia coli SCOP: d.68.2.1 Alpha and beta proteins (a+b)    IF3-like    EPT/RTPC-like    RNA 3'-terminal phosphate cyclase, RPTC    RNA 3'-terminal phosphate cyclase, RPTC    Escherichia coli SCOP: d.68.2.1 Alpha and beta proteins (a+b)    IF3-like    EPT/RTPC-like    RNA 3'-terminal phosphate cyclase, RPTC    RNA 3'-terminal phosphate cyclase, RPTC    Escherichia coli GO:  RNA-3'-phosphate cyclase activity

Image Source: PDB

Loops in ArchDB40 clusters

1qmh_A_50 - HE => SUBCLASS : 1.1.1
1qmh_A_50 - HE => SUBCLASS : 1.1.2
1qmh_A_140 - HE => SUBCLASS : 2.2.1
1qmh_A_17 - HE => SUBCLASS : 3.25.1
1qmh_A_234 - HA => SUBCLASS : 2.2.13
1qmh_A_326 - HA => SUBCLASS : 3.1.1
1qmh_A_326 - HA => SUBCLASS : 4.2.6
1qmh_A_300 - EH => SUBCLASS : 4.11.8
1qmh_A_247 - EH => SUBCLASS : 5.1.1
1qmh_A_247 - EH => SUBCLASS : 6.2.1

Loops in ArchDB95 clusters

1qmh_A_300 - EH => SUBCLASS : 4.4.5
1qmh_A_300 - EH => SUBCLASS : 4.4.7
1qmh_A_247 - EH => SUBCLASS : 5.1.1
1qmh_A_247 - EH => SUBCLASS : 5.3.1
1qmh_A_247 - EH => SUBCLASS : 6.2.1
1qmh_A_50 - HE => SUBCLASS : 1.2.3
1qmh_A_140 - HE => SUBCLASS : 2.1.1
1qmh_A_50 - HE => SUBCLASS : 2.1.2
1qmh_A_50 - HE => SUBCLASS : 2.5.9
1qmh_A_17 - HE => SUBCLASS : 3.30.1
1qmh_A_283 - HE => SUBCLASS : 3.36.1
1qmh_A_99 - HE => SUBCLASS : 4.34.2
1qmh_A_234 - HA => SUBCLASS : 2.2.6
1qmh_A_326 - HA => SUBCLASS : 4.11.1
1qmh_A_326 - HA => SUBCLASS : 5.4.3

Loops in ArchDB-EC clusters

1qmh_A_99 - HE => SUBCLASS : 4.16.8

Loops not clustered in ArchDB

1qmh_A_77 - AR
1qmh_A_221 - AR
1qmh_A_166 - AR
1qmh_A_77 - AR
1qmh_A_221 - AR
1qmh_A_166 - AR
1qmh_A_6 - EH
1qmh_A_34 - EH
1qmh_A_87 - EH
1qmh_A_117 - EH
1qmh_A_189 - EH
1qmh_A_326 - HA
1qmh_A_234 - HA
1qmh_A_150 - HA
1qmh_A_66 - HA
1qmh_A_150 - HA
1qmh_A_66 - HA
1qmh_A_203 - HE
1qmh_A_308 - HE
1qmh_A_260 - HH
1qmh_A_134 - HH

1qmh A - percentage of sequence identity: 100
1qmh B - percentage of sequence identity: 100
1qmi A - percentage of sequence identity: 100
1qmi B - percentage of sequence identity: 100
1qmi C - percentage of sequence identity: 100
1qmi D - percentage of sequence identity: 100