PDB: 1qna Compound: transcription initiation factor tfiid-1 Classification: TATA BOX-BINDING PROTEIN (TBP) Entry date in PDB: 2000-02-07 Resolution [Å]: 1.80 R-Factor: 0.000

CHAIN: A SWISS-PROT/TREMBL: P28147    KEYWORD: 3D-structure    DNA-binding    Nuclear protein    Repeat    Transcription    SCOP: d.129.1.1 Alpha and beta proteins (a+b)    TBP-like    TATA-box binding protein-like    TATA-box binding protein (TBP), C-terminal domain    TATA-box binding protein (TBP), C-terminal domain    Arabidopsis thaliana SCOP: d.129.1.1 Alpha and beta proteins (a+b)    TBP-like    TATA-box binding protein-like    TATA-box binding protein (TBP), C-terminal domain    TATA-box binding protein (TBP), C-terminal domain    Arabidopsis thaliana GO:  nucleus    transcription factor TFIID complex    binding    DNA binding    RNA polymerase II transcription factor activity    regulation of transcription, DNA-dependent    transcription initiation from RNA polymerase II promoter    CHAIN: B SWISS-PROT/TREMBL: P28147    KEYWORD: 3D-structure    DNA-binding    Nuclear protein    Repeat    Transcription    SCOP: d.129.1.1 Alpha and beta proteins (a+b)    TBP-like    TATA-box binding protein-like    TATA-box binding protein (TBP), C-terminal domain    TATA-box binding protein (TBP), C-terminal domain    Arabidopsis thaliana SCOP: d.129.1.1 Alpha and beta proteins (a+b)    TBP-like    TATA-box binding protein-like    TATA-box binding protein (TBP), C-terminal domain    TATA-box binding protein (TBP), C-terminal domain    Arabidopsis thaliana GO:  nucleus    transcription factor TFIID complex    binding    DNA binding    RNA polymerase II transcription factor activity    regulation of transcription, DNA-dependent    transcription initiation from RNA polymerase II promoter

Image Source: PDB

Loops in ArchDB95 clusters

1qna_A_169 - EH => SUBCLASS : 2.1.42
1qna_A_24 - EH => SUBCLASS : 6.26.1
1qna_A_111 - EH => SUBCLASS : 6.26.1
1qna_A_130 - HE => SUBCLASS : 0.1.20
1qna_A_87 - HE => SUBCLASS : 3.2.10
1qna_A_40 - HE => SUBCLASS : 3.4.1
1qna_A_69 - HA => SUBCLASS : 3.1.1
1qna_A_160 - HA => SUBCLASS : 4.5.1
1qna_A_59 - HA => SUBCLASS : 4.10.1
1qna_A_141 - HA => SUBCLASS : 5.35.1

Loops not clustered in ArchDB

1qna_A_78 - EH
1qna_A_50 - HA
1qna_A_151 - HA

1c9b B - percentage of sequence identity: 83
1c9b F - percentage of sequence identity: 83
1c9b J - percentage of sequence identity: 83
1c9b N - percentage of sequence identity: 83
1c9b R - percentage of sequence identity: 83
1cdw A - percentage of sequence identity: 83
1jfi C - percentage of sequence identity: 82
1ngm A - percentage of sequence identity: 85
1ngm E - percentage of sequence identity: 85
1ngm I - percentage of sequence identity: 85
1ngm M - percentage of sequence identity: 85
1nh2 A - percentage of sequence identity: 85
1nvp A - percentage of sequence identity: 83
1qn3 A - percentage of sequence identity: 100
1qn3 B - percentage of sequence identity: 100
1qn4 A - percentage of sequence identity: 100
1qn4 B - percentage of sequence identity: 100
1qn5 A - percentage of sequence identity: 100
1qn5 B - percentage of sequence identity: 100
1qn6 A - percentage of sequence identity: 100
1qn6 B - percentage of sequence identity: 100
1qn7 A - percentage of sequence identity: 100
1qn7 B - percentage of sequence identity: 100
1qn8 A - percentage of sequence identity: 100
1qn8 B - percentage of sequence identity: 100
1qn9 A - percentage of sequence identity: 100
1qn9 B - percentage of sequence identity: 100
1qna A - percentage of sequence identity: 100
1qna B - percentage of sequence identity: 100
1qnb A - percentage of sequence identity: 100
1qnb B - percentage of sequence identity: 100
1qnc A - percentage of sequence identity: 100
1qnc B - percentage of sequence identity: 100
1qne A - percentage of sequence identity: 100
1qne B - percentage of sequence identity: 100
1rm1 A - percentage of sequence identity: 85
1tba B - percentage of sequence identity: 85
1tbp A - percentage of sequence identity: 84
1tbp B - percentage of sequence identity: 84
1tgh A - percentage of sequence identity: 83
1vok A - percentage of sequence identity: 100
1vok B - percentage of sequence identity: 100
1vol B - percentage of sequence identity: 100
1ytb A - percentage of sequence identity: 85
1ytb B - percentage of sequence identity: 85
1ytf A - percentage of sequence identity: 85