PDB: 1qo0 Compound: amic Classification: BINDING PROTEIN Entry date in PDB: 1999-12-23 Resolution [Å]: 2.25 R-Factor: 0.186

CHAIN: A SWISS-PROT/TREMBL: P27017    KEYWORD: 3D-structure    Complete proteome    Kinase    Repressor    Transferase    SCOP: c.93.1.1 Alpha and beta proteins (a/b)    Periplasmic binding protein-like I    Periplasmic binding protein-like I    L-arabinose binding protein-like    Amide receptor/negative regulator of the amidase operon (AmiC)    Pseudomonas aeruginosa GO:  periplasmic space (sensu Gram-negative Bacteria)    amino acid-polyamine transporter activity    amino acid transport    CHAIN: B SWISS-PROT/TREMBL: P27017    KEYWORD: 3D-structure    Complete proteome    Kinase    Repressor    Transferase    SCOP: c.93.1.1 Alpha and beta proteins (a/b)    Periplasmic binding protein-like I    Periplasmic binding protein-like I    L-arabinose binding protein-like    Amide receptor/negative regulator of the amidase operon (AmiC)    Pseudomonas aeruginosa GO:  periplasmic space (sensu Gram-negative Bacteria)    amino acid-polyamine transporter activity    amino acid transport    CHAIN: D SWISS-PROT/TREMBL: P10932    KEYWORD: 3D-structure    Complete proteome    Transcription antitermination    Transcription regulation    SCOP: c.23.1.3 Alpha and beta proteins (a/b)    Flavodoxin-like    CheY-like    Positive regulator of the amidase operon AmiR    Positive regulator of the amidase operon AmiR    Pseudomonas aeruginosa GO:  transcription antiterminator activity    regulation of transcription    CHAIN: E SWISS-PROT/TREMBL: P10932    KEYWORD: 3D-structure    Complete proteome    Transcription antitermination    Transcription regulation    SCOP: c.23.1.3 Alpha and beta proteins (a/b)    Flavodoxin-like    CheY-like    Positive regulator of the amidase operon AmiR    Positive regulator of the amidase operon AmiR    Pseudomonas aeruginosa GO:  transcription antiterminator activity    regulation of transcription

Image Source: PDB

Loops in ArchDB40 clusters

1qo0_A_85 - HE => SUBCLASS : 1.1.1
1qo0_A_151 - HE => SUBCLASS : 2.2.2
1qo0_A_244 - HE => SUBCLASS : 2.7.1
1qo0_A_308 - HE => SUBCLASS : 2.8.2
1qo0_A_308 - HE => SUBCLASS : 2.8.5
1qo0_A_60 - HE => SUBCLASS : 3.1.1
1qo0_A_183 - HE => SUBCLASS : 3.1.1
1qo0_A_244 - HE => SUBCLASS : 3.12.1
1qo0_A_320 - HA => SUBCLASS : 2.2.2
1qo0_A_341 - HA => SUBCLASS : 3.1.1
1qo0_A_325 - HA => SUBCLASS : 4.1.1
1qo0_A_325 - HA => SUBCLASS : 6.1.1
1qo0_A_142 - EH => SUBCLASS : 2.3.2
1qo0_D_81 - EH => SUBCLASS : 4.26.2
1qo0_A_229 - EH => SUBCLASS : 5.1.1
1qo0_A_236 - HH => SUBCLASS : 2.1.8
1qo0_D_164 - HH => SUBCLASS : 3.2.12
1qo0_A_263 - HH => SUBCLASS : 8.14.1

Loops in ArchDB95 clusters

1qo0_A_229 - EH => SUBCLASS : 4.2.4
1qo0_D_81 - EH => SUBCLASS : 4.33.1
1qo0_D_55 - EH => SUBCLASS : 4.67.1
1qo0_A_229 - EH => SUBCLASS : 5.1.1
1qo0_A_170 - EH => SUBCLASS : 5.20.1
1qo0_A_236 - HH => SUBCLASS : 2.3.2
1qo0_D_164 - HH => SUBCLASS : 3.4.10
1qo0_A_263 - HH => SUBCLASS : 8.29.1
1qo0_A_85 - HE => SUBCLASS : 1.1.1
1qo0_D_23 - HE => SUBCLASS : 1.1.1
1qo0_D_23 - HE => SUBCLASS : 2.1.1
1qo0_A_151 - HE => SUBCLASS : 2.5.2
1qo0_A_151 - HE => SUBCLASS : 2.5.3
1qo0_A_308 - HE => SUBCLASS : 2.7.4
1qo0_D_91 - HE => SUBCLASS : 3.1.1
1qo0_A_60 - HE => SUBCLASS : 3.1.1
1qo0_A_183 - HE => SUBCLASS : 3.1.1
1qo0_A_244 - HE => SUBCLASS : 3.8.1
1qo0_D_65 - HE => SUBCLASS : 5.1.2
1qo0_A_320 - HA => SUBCLASS : 2.2.2
1qo0_A_341 - HA => SUBCLASS : 3.1.1
1qo0_A_325 - HA => SUBCLASS : 4.1.1

Loops not clustered in ArchDB

1qo0_D_38 - AR
1qo0_A_336 - AR
1qo0_A_251 - EH
1qo0_A_200 - EH
1qo0_A_117 - EH
1qo0_A_78 - EH
1qo0_A_50 - EH
1qo0_A_9 - EH
1qo0_D_104 - EH
1qo0_D_14 - EH
1qo0_A_101 - HA
1qo0_A_210 - HE
1qo0_A_128 - HE
1qo0_A_21 - HE
1qo0_D_3 - HE
1qo0_D_115 - HH
1qo0_A_284 - HH

1pea - - percentage of sequence identity: 100
1qnl A - percentage of sequence identity: 99
1qo0 A - percentage of sequence identity: 100
1qo0 B - percentage of sequence identity: 100
null nu - percentage of sequence identity: 0