PDB: 1qpb Compound: pyruvate decarboxylase (form b) Classification: LYASE Entry date in PDB: 2000-02-04 Resolution [Å]: 2.40 R-Factor: 0.233

CHAIN: A SWISS-PROT/TREMBL: P06169    KEYWORD: 3D-structure    Acetylation    Decarboxylase    Flavoprotein    Lyase    Magnesium    Metal-binding    Multigene family    Thiamine pyrophosphate    EC: 4.1.1.1 SCOP: c.31.1.3 Alpha and beta proteins (a/b)    DHS-like NAD/FAD-binding domain    DHS-like NAD/FAD-binding domain    Pyruvate oxidase and decarboxylase, middle domain    Pyruvate decarboxylase    Baker's yeast (Saccharomyces cerevisiae) SCOP: c.36.1.5 Alpha and beta proteins (a/b)    Thiamin diphosphate-binding fold (THDP-binding)    Thiamin diphosphate-binding fold (THDP-binding)    Pyruvate oxidase and decarboxylase Pyr module    Pyruvate decarboxylase    Baker's yeast (Saccharomyces cerevisiae) SCOP: c.36.1.9 Alpha and beta proteins (a/b)    Thiamin diphosphate-binding fold (THDP-binding)    Thiamin diphosphate-binding fold (THDP-binding)    Pyruvate oxidase and decarboxylase PP module    Pyruvate decarboxylase    Baker's yeast (Saccharomyces cerevisiae) GO:  catalytic activity    thiamin pyrophosphate binding    CHAIN: B SWISS-PROT/TREMBL: P06169    KEYWORD: 3D-structure    Acetylation    Decarboxylase    Flavoprotein    Lyase    Magnesium    Metal-binding    Multigene family    Thiamine pyrophosphate    EC: 4.1.1.1 SCOP: c.31.1.3 Alpha and beta proteins (a/b)    DHS-like NAD/FAD-binding domain    DHS-like NAD/FAD-binding domain    Pyruvate oxidase and decarboxylase, middle domain    Pyruvate decarboxylase    Baker's yeast (Saccharomyces cerevisiae) SCOP: c.36.1.5 Alpha and beta proteins (a/b)    Thiamin diphosphate-binding fold (THDP-binding)    Thiamin diphosphate-binding fold (THDP-binding)    Pyruvate oxidase and decarboxylase Pyr module    Pyruvate decarboxylase    Baker's yeast (Saccharomyces cerevisiae) SCOP: c.36.1.9 Alpha and beta proteins (a/b)    Thiamin diphosphate-binding fold (THDP-binding)    Thiamin diphosphate-binding fold (THDP-binding)    Pyruvate oxidase and decarboxylase PP module    Pyruvate decarboxylase    Baker's yeast (Saccharomyces cerevisiae) GO:  catalytic activity    thiamin pyrophosphate binding

Image Source: PDB

Loops in ArchDB95 clusters

1qpb_A_135 - EH => SUBCLASS : 3.3.4
1qpb_A_135 - EH => SUBCLASS : 3.10.1
1qpb_A_465 - EH => SUBCLASS : 4.75.1
1qpb_A_214 - EH => SUBCLASS : 7.28.1
1qpb_A_405 - EH => SUBCLASS : 8.23.1
1qpb_A_298 - AR => SUBCLASS : 4.21.1
1qpb_A_169 - HE => SUBCLASS : 1.3.3
1qpb_A_82 - HE => SUBCLASS : 2.1.1
1qpb_A_124 - HE => SUBCLASS : 2.2.1
1qpb_A_124 - HE => SUBCLASS : 2.2.8
1qpb_A_31 - HE => SUBCLASS : 3.10.2
1qpb_A_367 - HE => SUBCLASS : 5.4.1
1qpb_A_498 - HE => SUBCLASS : 5.35.1
1qpb_A_292 - HA => SUBCLASS : 2.2.1
1qpb_A_306 - HA => SUBCLASS : 2.2.3

Loops not clustered in ArchDB

1qpb_A_281 - AR
1qpb_A_534 - EH
1qpb_A_438 - EH
1qpb_A_383 - EH
1qpb_A_319 - EH
1qpb_A_259 - EH
1qpb_A_175 - EH
1qpb_A_163 - EH
1qpb_A_95 - EH
1qpb_A_68 - EH
1qpb_A_44 - EH
1qpb_A_21 - EH
1qpb_A_3 - EH
1qpb_A_509 - EH
1qpb_A_242 - HA
1qpb_A_313 - HA
1qpb_A_515 - HE
1qpb_A_454 - HE
1qpb_A_417 - HE
1qpb_A_390 - HE
1qpb_A_270 - HE
1qpb_A_228 - HE
1qpb_A_194 - HE
1qpb_A_145 - HE
1qpb_A_51 - HE
1qpb_A_6 - HE
1qpb_A_76 - HH
1qpb_A_326 - HH
1qpb_A_444 - HH
1qpb_A_475 - HH

1pvd A - percentage of sequence identity: 98
1pvd B - percentage of sequence identity: 98
1pyd A - percentage of sequence identity: 98
1pyd B - percentage of sequence identity: 98
1qpb A - percentage of sequence identity: 100
1qpb B - percentage of sequence identity: 100