PDB: 1qv9 Compound: f420-dependent methylenetetrahydromethanopterin de Classification: OXIDOREDUCTASE Entry date in PDB: 2003-11-11 Resolution [Å]: 1.54 R-Factor: 0.201

CHAIN: A SWISS-PROT/TREMBL: P94951    KEYWORD: 3D-structure    Complete proteome    Methanogenesis    One-carbon metabolism    Oxidoreductase    EC: 1.5.99.9 SCOP: c.127.1.1 Alpha and beta proteins (a/b)    F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)    F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)    F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)    F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)    Archaeon Methanopyrus kandleri GO:  ferredoxin hydrogenase activity    methanogenesis    CHAIN: B SWISS-PROT/TREMBL: P94951    KEYWORD: 3D-structure    Complete proteome    Methanogenesis    One-carbon metabolism    Oxidoreductase    EC: 1.5.99.9 SCOP: c.127.1.1 Alpha and beta proteins (a/b)    F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)    F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)    F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)    F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)    Archaeon Methanopyrus kandleri GO:  ferredoxin hydrogenase activity    methanogenesis    CHAIN: C SWISS-PROT/TREMBL: P94951    KEYWORD: 3D-structure    Complete proteome    Methanogenesis    One-carbon metabolism    Oxidoreductase    EC: 1.5.99.9 SCOP: c.127.1.1 Alpha and beta proteins (a/b)    F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)    F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)    F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)    F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)    Archaeon Methanopyrus kandleri GO:  ferredoxin hydrogenase activity    methanogenesis

Image Source: PDB

Loops in ArchDB40 clusters

1qv9_A_147 - HH => SUBCLASS : 1.3.1
1qv9_A_147 - HH => SUBCLASS : 1.3.6
1qv9_A_206 - HH => SUBCLASS : 3.4.2

Loops in ArchDB95 clusters

1qv9_A_147 - HH => SUBCLASS : 1.3.1
1qv9_A_206 - HH => SUBCLASS : 3.3.2
1qv9_A_57 - HE => SUBCLASS : 3.3.2
1qv9_A_57 - HE => SUBCLASS : 3.3.4

Loops in ArchDB-EC clusters

1qv9_A_206 - HH => SUBCLASS : 3.4.1

Loops not clustered in ArchDB

1qv9_A_33 - EH
1qv9_A_67 - EH
1qv9_A_115 - EH
1qv9_A_180 - EH
1qv9_A_4 - HA
1qv9_A_94 - HA
1qv9_A_4 - HA
1qv9_A_94 - HA
1qv9_A_153 - HE
1qv9_A_78 - HE
1qv9_A_139 - HH
1qv9_A_227 - HH
1qv9_A_46 - HH

1qv9 A - percentage of sequence identity: 100
1qv9 B - percentage of sequence identity: 100
1qv9 C - percentage of sequence identity: 100
1u6i A - percentage of sequence identity: 100
1u6i B - percentage of sequence identity: 100
1u6i C - percentage of sequence identity: 100
1u6i D - percentage of sequence identity: 100
1u6i E - percentage of sequence identity: 100
1u6i F - percentage of sequence identity: 100
1u6i G - percentage of sequence identity: 100
1u6i H - percentage of sequence identity: 100
1u6i I - percentage of sequence identity: 100
1u6i J - percentage of sequence identity: 100
1u6i K - percentage of sequence identity: 100
1u6i L - percentage of sequence identity: 100
1u6j A - percentage of sequence identity: 100
1u6j B - percentage of sequence identity: 100
1u6j C - percentage of sequence identity: 100
1u6j D - percentage of sequence identity: 100
1u6j E - percentage of sequence identity: 100
1u6j F - percentage of sequence identity: 100
1u6j G - percentage of sequence identity: 100
1u6j H - percentage of sequence identity: 100
1u6j I - percentage of sequence identity: 100
1u6j J - percentage of sequence identity: 100
1u6j K - percentage of sequence identity: 100
1u6j L - percentage of sequence identity: 100
1u6k A - percentage of sequence identity: 100
1u6k B - percentage of sequence identity: 100
1u6k C - percentage of sequence identity: 100