PDB: 1r3e Compound: trna pseudouridine synthase b Classification: LYASE/RNA Entry date in PDB: 2003-11-04 Resolution [Å]: 2.10 R-Factor: 0.223

CHAIN: A SWISS-PROT/TREMBL: Q9WZW0    KEYWORD: 3D-structure    Complete proteome    Lyase    tRNA processing    EC: 4.2.1.70 SCOP: b.122.1.1 All beta proteins    PUA domain-like    PUA domain-like    PUA domain    Pseudouridine synthase II TruB, C-terminal domain    Thermotoga maritima SCOP: d.265.1.2 Alpha and beta proteins (a+b)    Pseudouridine synthase    Pseudouridine synthase    Pseudouridine synthase II TruB    Pseudouridine synthase II TruB    Thermotoga maritima GO:  pseudouridylate synthase activity    RNA binding    RNA processing    tRNA processing

Image Source: PDB

Loops in ArchDB40 clusters

1r3e_A_74 - HA => SUBCLASS : 1.3.1
1r3e_A_273 - HA => SUBCLASS : 4.7.2
1r3e_A_84 - HA => SUBCLASS : 8.6.1
1r3e_A_240 - EH => SUBCLASS : 1.1.16
1r3e_A_167 - EH => SUBCLASS : 4.27.1
1r3e_A_167 - EH => SUBCLASS : 5.5.1
1r3e_A_13 - EH => SUBCLASS : 5.5.2

Loops in ArchDB95 clusters

1r3e_A_240 - EH => SUBCLASS : 1.1.22
1r3e_A_13 - EH => SUBCLASS : 5.9.1
1r3e_A_167 - EH => SUBCLASS : 5.9.1
1r3e_A_74 - HA => SUBCLASS : 1.4.1
1r3e_A_84 - HA => SUBCLASS : 8.11.1

Loops in ArchDB-EC clusters

1r3e_A_25 - HE => SUBCLASS : 3.2.6

Loops not clustered in ArchDB

1r3e_A_257 - AR
1r3e_A_52 - AR
1r3e_A_229 - AR
1r3e_A_264 - AR
1r3e_A_52 - AR
1r3e_A_117 - AR
1r3e_A_229 - AR
1r3e_A_257 - AR
1r3e_A_264 - AR
1r3e_A_117 - AR
1r3e_A_95 - EH
1r3e_A_134 - EH
1r3e_A_208 - EH
1r3e_A_130 - HA
1r3e_A_273 - HA
1r3e_A_195 - HA
1r3e_A_151 - HA
1r3e_A_130 - HA
1r3e_A_84 - HA
1r3e_A_74 - HA
1r3e_A_283 - HA
1r3e_A_41 - HA
1r3e_A_151 - HA
1r3e_A_283 - HA
1r3e_A_195 - HA
1r3e_A_41 - HA
1r3e_A_105 - HE
1r3e_A_248 - HE
1r3e_A_221 - HE
1r3e_A_136 - HE
1r3e_A_180 - HE

1ze1 A - percentage of sequence identity: 99
1ze1 B - percentage of sequence identity: 99
1ze1 C - percentage of sequence identity: 99
1ze1 D - percentage of sequence identity: 99
1ze2 A - percentage of sequence identity: 99
1ze2 B - percentage of sequence identity: 99
2ab4 A - percentage of sequence identity: 99