PDB: 1ry9 Compound: surface presentation of antigens protein spak Classification: CHAPERONE Entry date in PDB: 2004-04-27 Resolution [Å]: 1.82 R-Factor: 0.183

CHAIN: A SWISS-PROT/TREMBL: P35530    KEYWORD: Complete proteome    Plasmid    Virulence    SCOP: d.198.1.1 Alpha and beta proteins (a+b)    Secretion chaperone-like    Type III secretory system chaperone    Type III secretory system chaperone    Surface presentation of antigens protein SpaK (Spa15)    Shigella flexneri GO:  type III protein (virulence-related) secretor activity    protein secretion    CHAIN: B SWISS-PROT/TREMBL: P35530    KEYWORD: Complete proteome    Plasmid    Virulence    SCOP: d.198.1.1 Alpha and beta proteins (a+b)    Secretion chaperone-like    Type III secretory system chaperone    Type III secretory system chaperone    Surface presentation of antigens protein SpaK (Spa15)    Shigella flexneri GO:  type III protein (virulence-related) secretor activity    protein secretion    CHAIN: C SWISS-PROT/TREMBL: P35530    KEYWORD: Complete proteome    Plasmid    Virulence    SCOP: d.198.1.1 Alpha and beta proteins (a+b)    Secretion chaperone-like    Type III secretory system chaperone    Type III secretory system chaperone    Surface presentation of antigens protein SpaK (Spa15)    Shigella flexneri GO:  type III protein (virulence-related) secretor activity    protein secretion    CHAIN: D SWISS-PROT/TREMBL: P35530    KEYWORD: Complete proteome    Plasmid    Virulence    SCOP: d.198.1.1 Alpha and beta proteins (a+b)    Secretion chaperone-like    Type III secretory system chaperone    Type III secretory system chaperone    Surface presentation of antigens protein SpaK (Spa15)    Shigella flexneri GO:  type III protein (virulence-related) secretor activity    protein secretion

Image Source: PDB

Loops in ArchDB40 clusters

1ry9_A_4 - HE => SUBCLASS : 6.2.5
1ry9_A_40 - HA => SUBCLASS : 2.1.2
1ry9_A_90 - HA => SUBCLASS : 2.2.3
1ry9_A_24 - HA => SUBCLASS : 4.3.1
1ry9_A_51 - EH => SUBCLASS : 1.1.5
1ry9_A_51 - EH => SUBCLASS : 1.1.6
1ry9_A_97 - EH => SUBCLASS : 7.12.1

Loops in ArchDB95 clusters

1ry9_A_51 - EH => SUBCLASS : 1.1.6
1ry9_A_97 - EH => SUBCLASS : 8.12.1
1ry9_A_4 - HE => SUBCLASS : 6.7.2
1ry9_A_40 - HA => SUBCLASS : 2.1.3
1ry9_A_90 - HA => SUBCLASS : 2.2.3
1ry9_A_24 - HA => SUBCLASS : 4.2.1

Loops not clustered in ArchDB

1ry9_A_33 - HA
1ry9_A_63 - HE

1ry9 A - percentage of sequence identity: 100
1ry9 B - percentage of sequence identity: 100
1ry9 C - percentage of sequence identity: 100
1ry9 D - percentage of sequence identity: 100