PDB: 1svb Compound: tick-borne encephalitis virus glycoprotein Classification: GLYCOPROTEIN Entry date in PDB: 1996-06-10 Resolution [Å]: 1.90 R-Factor: 0.183

CHAIN: - SWISS-PROT/TREMBL: P14336    KEYWORD: 3D-structure    ATP-binding    Coat protein    Core protein    Envelope protein    Glycoprotein    Helicase    Hydrolase    Nonstructural protein    Polyprotein    RNA-directed RNA polymerase    Transferase    Transmembrane    EC: 2.7.7.48 SCOP: b.1.18.4 All beta proteins    Immunoglobulin-like beta-sandwich    E set domains    Class II viral fusion proteins C-terminal domain    Envelope glycoprotein    Tick-borne encephalitis virus SCOP: f.10.1.1 Membrane and cell surface proteins and peptides    Viral glycoprotein, central and dimerisation domains    Viral glycoprotein, central and dimerisation domains    Viral glycoprotein, central and dimerisation domains    Envelope glycoprotein    Tick-borne encephalitis virus GO:  viral capsid    viral envelope    virion    ATP binding    ATP-dependent helicase activity    double-stranded RNA binding    helicase activity    nucleic acid binding    RNA binding    RNA helicase activity    RNA-directed RNA polymerase activity    serine-type endopeptidase activity    structural molecule activity    viral genome replication    viral infectious cycle

Image Source: PDB

Loops in ArchDB40 clusters

1svb_*_363 - HA => SUBCLASS : 2.2.4
1svb_*_273 - HA => SUBCLASS : 2.3.1
1svb_*_379 - HA => SUBCLASS : 2.3.1
1svb_*_171 - HA => SUBCLASS : 3.4.3
1svb_*_54 - AR => SUBCLASS : 1.1.11
1svb_*_280 - AR => SUBCLASS : 3.21.1
1svb_*_20 - AR => SUBCLASS : 4.1.1
1svb_*_126 - AR => SUBCLASS : 4.2.2
1svb_*_161 - AR => SUBCLASS : 4.7.1
1svb_*_10 - AR => SUBCLASS : 4.29.1

Loops in ArchDB95 clusters

1svb_*_54 - AR => SUBCLASS : 1.2.12
1svb_*_54 - AR => SUBCLASS : 1.2.16
1svb_*_126 - AR => SUBCLASS : 3.2.1
1svb_*_126 - AR => SUBCLASS : 3.2.8
1svb_*_20 - AR => SUBCLASS : 4.1.1
1svb_*_10 - AR => SUBCLASS : 4.26.1
1svb_*_161 - AR => SUBCLASS : 5.2.1
1svb_*_363 - HA => SUBCLASS : 2.2.4
1svb_*_273 - HA => SUBCLASS : 2.3.1
1svb_*_379 - HA => SUBCLASS : 2.3.1
1svb_*_171 - HA => SUBCLASS : 3.5.2

Loops in ArchDB-EC clusters

1svb_*_171 - HA => SUBCLASS : 4.11.1

Loops not clustered in ArchDB

1svb_*_371 - AR
1svb_*_126 - AR
1svb_*_109 - AR
1svb_*_63 - AR
1svb_*_54 - AR
1svb_*_38 - AR
1svb_*_20 - AR
1svb_*_10 - AR
1svb_*_371 - AR
1svb_*_161 - AR
1svb_*_181 - AR
1svb_*_368 - AR
1svb_*_356 - AR
1svb_*_342 - AR
1svb_*_326 - AR
1svb_*_287 - AR
1svb_*_280 - AR
1svb_*_338 - AR
1svb_*_227 - AR
1svb_*_368 - AR
1svb_*_356 - AR
1svb_*_63 - AR
1svb_*_38 - AR
1svb_*_181 - AR
1svb_*_109 - AR
1svb_*_287 - AR
1svb_*_227 - AR
1svb_*_342 - AR
1svb_*_338 - AR
1svb_*_326 - AR
1svb_*_254 - EH
1svb_*_212 - EH
1svb_*_273 - HA
1svb_*_312 - HA
1svb_*_31 - HA
1svb_*_363 - HA
1svb_*_242 - HA
1svb_*_90 - HA
1svb_*_197 - HA
1svb_*_31 - HA
1svb_*_312 - HA
1svb_*_242 - HA
1svb_*_379 - HA
1svb_*_90 - HA
1svb_*_197 - HA
1svb_*_138 - HA
1svb_*_171 - HA
1svb_*_138 - HA
1svb_*_217 - HE
1svb_*_261 - HE

1k4r A - percentage of sequence identity: 100
1k4r B - percentage of sequence identity: 100
1k4r C - percentage of sequence identity: 100
1n6g A - percentage of sequence identity: 100
1n6g B - percentage of sequence identity: 100
1n6g C - percentage of sequence identity: 100
1na4 A - percentage of sequence identity: 100
1na4 B - percentage of sequence identity: 100
1na4 C - percentage of sequence identity: 100
1urz A - percentage of sequence identity: 100
1urz B - percentage of sequence identity: 100
1urz C - percentage of sequence identity: 100
1urz D - percentage of sequence identity: 100
1urz E - percentage of sequence identity: 100
1urz F - percentage of sequence identity: 100