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Information on 1tgo
PDB: 1tgo
Compound: thermostable b DNA polymerase
Classification: TRANSFERASE
Entry date in PDB: 1999-03-22
Resolution [Å]: 2.50
R-Factor: 0.209


CHAIN: A
SWISS-PROT/TREMBL: P56689
   KEYWORD: 3D-structure    DNA replication    DNA-binding    DNA-directed DNA polymerase    Exonuclease    Hydrolase    Multifunctional enzyme    Nuclease    Transferase   
EC: 2.7.7.7
SCOP: c.55.3.5 Alpha and beta proteins (a/b)    Ribonuclease H-like motif    Ribonuclease H-like    DnaQ-like 3'-5' exonuclease    Exonuclease domain of family B DNA polymerases    Archaeon Thermococcus gorgonarius
SCOP: e.8.1.1 Multi-domain proteins (alpha and beta)    DNA/RNA polymerases    DNA/RNA polymerases    DNA polymerase I    Family B DNA polymerase    Archaeon Thermococcus gorgonarius
GO:  nucleus    3'-5' exonuclease activity    DNA binding    DNA-directed DNA polymerase activity    nucleotide binding    DNA replication   
1tgo Image
Image Source: PDB

Stored Loops of 1tgo

Loops in ArchDB40 clusters

1tgo_A_48 - HE => SUBCLASS : 1.2.1
1tgo_A_507 - HE => SUBCLASS : 2.2.2
1tgo_A_187 - HE => SUBCLASS : 3.1.1
1tgo_A_92 - HE => SUBCLASS : 3.3.1
1tgo_A_55 - HA => SUBCLASS : 2.1.1
1tgo_A_67 - HA => SUBCLASS : 2.1.5
1tgo_A_157 - HA => SUBCLASS : 2.2.2
1tgo_A_593 - HA => SUBCLASS : 3.1.1
1tgo_A_431 - HA => SUBCLASS : 5.5.1
1tgo_A_205 - EH => SUBCLASS : 1.4.4
1tgo_A_181 - EH => SUBCLASS : 2.1.2
1tgo_A_37 - EH => SUBCLASS : 2.1.2
1tgo_A_78 - EH => SUBCLASS : 2.1.2
1tgo_A_181 - EH => SUBCLASS : 2.1.6
1tgo_A_543 - EH => SUBCLASS : 4.34.2
1tgo_A_248 - AR => SUBCLASS : 3.1.1
1tgo_A_248 - AR => SUBCLASS : 3.5.2
1tgo_A_248 - AR => SUBCLASS : 4.6.1
1tgo_A_341 - HH => SUBCLASS : 2.1.1
1tgo_A_341 - HH => SUBCLASS : 2.1.4
1tgo_A_617 - HH => SUBCLASS : 2.4.3
1tgo_A_448 - HH => SUBCLASS : 3.4.2
1tgo_A_448 - HH => SUBCLASS : 3.4.9

Loops in ArchDB95 clusters

1tgo_A_205 - EH => SUBCLASS : 1.4.5
1tgo_A_181 - EH => SUBCLASS : 2.1.3
1tgo_A_37 - EH => SUBCLASS : 2.1.5
1tgo_A_78 - EH => SUBCLASS : 2.1.11
1tgo_A_396 - EH => SUBCLASS : 2.6.4
1tgo_A_61 - AR => SUBCLASS : 2.1.11
1tgo_A_341 - HH => SUBCLASS : 2.1.1
1tgo_A_448 - HH => SUBCLASS : 3.3.2
1tgo_A_493 - HH => SUBCLASS : 8.5.1
1tgo_A_349 - HH => SUBCLASS : 9.25.1
1tgo_A_507 - HE => SUBCLASS : 1.1.1
1tgo_A_48 - HE => SUBCLASS : 1.3.6
1tgo_A_507 - HE => SUBCLASS : 2.5.2
1tgo_A_92 - HE => SUBCLASS : 3.6.1
1tgo_A_92 - HE => SUBCLASS : 3.6.3
1tgo_A_535 - HA => SUBCLASS : 2.6.1
1tgo_A_240 - HA => SUBCLASS : 3.35.1
1tgo_A_431 - HA => SUBCLASS : 5.8.1
1tgo_A_431 - HA => SUBCLASS : 6.10.1

Loops in ArchDB-EC clusters

1tgo_A_448 - HH => SUBCLASS : 3.4.2

Loops not clustered in ArchDB

1tgo_A_389 - AR
1tgo_A_25 - AR
1tgo_A_25 - AR
1tgo_A_61 - AR
1tgo_A_389 - AR
1tgo_A_248 - AR
1tgo_A_106 - EH
1tgo_A_603 - EH
1tgo_A_714 - EH
1tgo_A_662 - EH
1tgo_A_440 - EH
1tgo_A_256 - EH
1tgo_A_13 - HA
1tgo_A_698 - HA
1tgo_A_67 - HA
1tgo_A_55 - HA
1tgo_A_157 - HA
1tgo_A_167 - HA
1tgo_A_240 - HA
1tgo_A_137 - HA
1tgo_A_431 - HA
1tgo_A_535 - HA
1tgo_A_577 - HA
1tgo_A_593 - HA
1tgo_A_698 - HA
1tgo_A_577 - HA
1tgo_A_167 - HA
1tgo_A_137 - HA
1tgo_A_13 - HA
1tgo_A_2 - HA
1tgo_A_2 - HA
1tgo_A_636 - HE
1tgo_A_553 - HE
1tgo_A_408 - HE
1tgo_A_374 - HE
1tgo_A_215 - HE
1tgo_A_679 - HE
1tgo_A_116 - HE
1tgo_A_260 - HH
1tgo_A_292 - HH
1tgo_A_305 - HH
1tgo_A_729 - HH
1tgo_A_473 - HH
1tgo_A_275 - HH

Homologous structures to 1tgo classified in ArchDB

1qqc A - percentage of sequence identity: 93
1wn7 A - percentage of sequence identity: 92
1wns A - percentage of sequence identity: 93