Logo
Information on 1uds
PDB: 1uds
Compound: ribonuclease ph
Classification: TRANSFERASE
Entry date in PDB: 2003-09-23
Resolution [Å]: 2.30
R-Factor: 0.221


CHAIN: A
SWISS-PROT/TREMBL: O67069
   KEYWORD: Complete proteome    Nucleotidyltransferase    Transferase    tRNA processing   
EC: 2.7.7.56
SCOP: d.14.1.4 Alpha and beta proteins (a+b)    Ribosomal protein S5 domain 2-like    Ribosomal protein S5 domain 2-like    Ribonuclease PH domain 1-like    Ribonuclease PH, domain 1    Aquifex aeolicus
SCOP: d.101.1.1 Alpha and beta proteins (a+b)    Ribonuclease PH domain 2-like    Ribonuclease PH domain 2-like    Ribonuclease PH domain 2-like    Ribonuclease PH, domain 2    Aquifex aeolicus
GO:  3'-5'-exoribonuclease activity    RNA binding    tRNA binding    tRNA-specific ribonuclease activity    RNA processing    tRNA processing   
1uds Image
Image Source: PDB

Stored Loops of 1uds

Loops in ArchDB95 clusters

1uds_A_170 - EH => SUBCLASS : 5.20.1
1uds_A_197 - EH => SUBCLASS : 5.50.1
1uds_A_242 - AR => SUBCLASS : 1.2.16
1uds_A_58 - AR => SUBCLASS : 2.1.15
1uds_A_211 - HE => SUBCLASS : 0.1.43
1uds_A_211 - HE => SUBCLASS : 0.1.67
1uds_A_177 - HE => SUBCLASS : 2.2.6
1uds_A_68 - HA => SUBCLASS : 2.1.1
1uds_A_26 - HA => SUBCLASS : 2.3.1
1uds_A_185 - HA => SUBCLASS : 4.3.1
1uds_A_185 - HA => SUBCLASS : 5.1.1

Loops not clustered in ArchDB

1uds_A_35 - AR
1uds_A_72 - EH
1uds_A_111 - EH
1uds_A_14 - HA
1uds_A_159 - HA
1uds_A_236 - HA
1uds_A_85 - HE
1uds_A_125 - HE

Homologous structures to 1uds classified in ArchDB

1oyp A - percentage of sequence identity: 63
1oyp B - percentage of sequence identity: 63
1oyp C - percentage of sequence identity: 63
1oyp D - percentage of sequence identity: 63
1oyp E - percentage of sequence identity: 63
1oyp F - percentage of sequence identity: 63
1oyr A - percentage of sequence identity: 63
1oyr B - percentage of sequence identity: 63
1oyr C - percentage of sequence identity: 63
1oyr D - percentage of sequence identity: 63
1oyr E - percentage of sequence identity: 63
1oyr F - percentage of sequence identity: 63
1oys A - percentage of sequence identity: 62
1udo A - percentage of sequence identity: 99
1udq A - percentage of sequence identity: 99