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Information on 1upt
PDB: 1upt
Compound: golgi autoantigen, golgin subfamily a member 4
Classification: COMPLEX (GTPASE/GOLGIN)
Entry date in PDB: 2003-10-30
Resolution [Å]: 1.70
R-Factor: 0.222


CHAIN: A
SWISS-PROT/TREMBL: P40616
   KEYWORD: GTP-binding    Multigene family    GTP-binding    Multigene family   
SCOP: c.37.1.8 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    G proteins    ADP-ribosylation factor    Human (Homo sapiens), ARL1
GO:  GTP binding    small GTPase mediated signal transduction   


CHAIN: B
SWISS-PROT/TREMBL: Q13439
   KEYWORD: Alternative splicing    Antigen    Coiled coil    Golgi stack   
SCOP: a.193.1.1 All alpha proteins    GRIP domain    GRIP domain    GRIP domain    Golgi autoantigen, golgin-245    Human (Homo sapiens)
GO:  


CHAIN: C


CHAIN: D
SWISS-PROT/TREMBL: Q13439
   KEYWORD: Alternative splicing    Antigen    Coiled coil    Golgi stack    Alternative splicing    Antigen    Coiled coil    Golgi stack   
SCOP: a.193.1.1 All alpha proteins    GRIP domain    GRIP domain    GRIP domain    Golgi autoantigen, golgin-245    Human (Homo sapiens)
GO:  


CHAIN: E
SWISS-PROT/TREMBL: P40616
   KEYWORD: GTP-binding    Multigene family    GTP-binding    Multigene family   
SCOP: c.37.1.8 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    G proteins    ADP-ribosylation factor    Human (Homo sapiens), ARL1
GO:  GTP binding    small GTPase mediated signal transduction   


CHAIN: F
SWISS-PROT/TREMBL: Q13439
   KEYWORD: Alternative splicing    Antigen    Coiled coil    Golgi stack   
SCOP: a.193.1.1 All alpha proteins    GRIP domain    GRIP domain    GRIP domain    Golgi autoantigen, golgin-245    Human (Homo sapiens)
GO:  


CHAIN: G
SWISS-PROT/TREMBL: P40616
   KEYWORD: GTP-binding    Multigene family    GTP-binding    Multigene family   
SCOP: c.37.1.8 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    G proteins    ADP-ribosylation factor    Human (Homo sapiens), ARL1
GO:  GTP binding    small GTPase mediated signal transduction   


CHAIN: H
SWISS-PROT/TREMBL: Q13439
   KEYWORD: Alternative splicing    Antigen    Coiled coil    Golgi stack   
SCOP: a.193.1.1 All alpha proteins    GRIP domain    GRIP domain    GRIP domain    Golgi autoantigen, golgin-245    Human (Homo sapiens)
GO:  
1upt Image
Image Source: PDB

Stored Loops of 1upt

Loops in ArchDB40 clusters

1upt_B_2196 - HH => SUBCLASS : 3.2.2
1upt_B_2196 - HH => SUBCLASS : 3.2.6

Loops in ArchDB95 clusters

1upt_A_87 - EH => SUBCLASS : 3.9.2
1upt_A_20 - EH => SUBCLASS : 6.1.1
1upt_A_61 - AR => SUBCLASS : 18.1.1
1upt_B_2196 - HH => SUBCLASS : 3.1.2
1upt_A_51 - HA => SUBCLASS : 2.1.1

Loops not clustered in ArchDB

1upt_A_153 - EH
1upt_A_120 - HA
1upt_A_30 - HE
1upt_A_100 - HE
1upt_B_2173 - HH
1upt_D_2173 - HH
1upt_D_2196 - HH

Homologous structures to 1upt classified in ArchDB

1r4a E - percentage of sequence identity: 100
1r4a F - percentage of sequence identity: 100
1r4a G - percentage of sequence identity: 100
1r4a H - percentage of sequence identity: 100
1upt B - percentage of sequence identity: 100
1upt D - percentage of sequence identity: 100
1upt F - percentage of sequence identity: 100
1upt H - percentage of sequence identity: 100