PDB: 1ur5 Compound: malate dehydrogenase Classification: OXIDOREDUCTASE Entry date in PDB: 2003-11-05 Resolution [Å]: 1.75 R-Factor: 0.190

CHAIN: A SWISS-PROT/TREMBL: P80040    KEYWORD: 3D-structure    NAD    Oxidoreductase    Tricarboxylic acid cycle    EC: 1.1.1.37 SCOP: c.2.1.5 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    LDH N-terminal domain-like    Malate dehydrogenase    Chloroflexus aurantiacus SCOP: d.162.1.1 Alpha and beta proteins (a+b)    LDH C-terminal domain-like    LDH C-terminal domain-like    Lactate & malate dehydrogenases, C-terminal domain    Malate dehydrogenase    Chloroflexus aurantiacus GO:  L-lactate dehydrogenase activity    L-malate dehydrogenase activity    oxidoreductase activity    glycolysis    malate metabolism    tricarboxylic acid cycle intermediate metabolism    CHAIN: C SWISS-PROT/TREMBL: P80040    KEYWORD: 3D-structure    NAD    Oxidoreductase    Tricarboxylic acid cycle    EC: 1.1.1.37 SCOP: c.2.1.5 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    LDH N-terminal domain-like    Malate dehydrogenase    Chloroflexus aurantiacus SCOP: d.162.1.1 Alpha and beta proteins (a+b)    LDH C-terminal domain-like    LDH C-terminal domain-like    Lactate & malate dehydrogenases, C-terminal domain    Malate dehydrogenase    Chloroflexus aurantiacus GO:  L-lactate dehydrogenase activity    L-malate dehydrogenase activity    oxidoreductase activity    glycolysis    malate metabolism    tricarboxylic acid cycle intermediate metabolism

Image Source: PDB

Loops in ArchDB40 clusters

1ur5_A_186 - HA => SUBCLASS : 2.1.1
1ur5_A_261 - HA => SUBCLASS : 2.2.15
1ur5_A_246 - HA => SUBCLASS : 4.30.1
1ur5_A_4 - EH => SUBCLASS : 3.32.1
1ur5_A_114 - EH => SUBCLASS : 4.28.1
1ur5_A_28 - EH => SUBCLASS : 4.33.1
1ur5_A_275 - EH => SUBCLASS : 6.12.1

Loops in ArchDB95 clusters

1ur5_A_140 - EH => SUBCLASS : 2.11.1
1ur5_A_4 - EH => SUBCLASS : 3.39.1
1ur5_A_114 - EH => SUBCLASS : 4.17.1
1ur5_A_28 - EH => SUBCLASS : 4.36.1
1ur5_A_275 - EH => SUBCLASS : 6.8.1
1ur5_A_59 - AR => SUBCLASS : 10.1.1
1ur5_A_212 - HH => SUBCLASS : 6.60.1
1ur5_A_227 - HE => SUBCLASS : 3.17.1
1ur5_A_12 - HE => SUBCLASS : 3.31.1
1ur5_A_90 - HE => SUBCLASS : 4.1.8
1ur5_A_50 - HE => SUBCLASS : 5.10.3
1ur5_A_145 - HE => SUBCLASS : 6.1.1
1ur5_A_122 - HE => SUBCLASS : 6.2.1
1ur5_A_186 - HA => SUBCLASS : 2.1.1
1ur5_A_261 - HA => SUBCLASS : 2.2.22
1ur5_A_246 - HA => SUBCLASS : 4.35.1

Loops in ArchDB-EC clusters

1ur5_A_145 - HE => SUBCLASS : 6.2.1

Loops not clustered in ArchDB

1ur5_A_59 - AR
1ur5_A_179 - AR
1ur5_A_167 - AR
1ur5_A_167 - AR
1ur5_A_179 - AR
1ur5_A_73 - EH
1ur5_A_191 - EH
1ur5_A_172 - HA
1ur5_A_172 - HA
1ur5_A_186 - HA
1ur5_A_246 - HA
1ur5_A_261 - HA
1ur5_A_199 - HH
1ur5_A_38 - HH

1guy A - percentage of sequence identity: 99
1guy C - percentage of sequence identity: 99
1ur5 A - percentage of sequence identity: 100
1ur5 C - percentage of sequence identity: 100
1uxg A - percentage of sequence identity: 99
1uxg B - percentage of sequence identity: 99
1uxh A - percentage of sequence identity: 99
1uxh B - percentage of sequence identity: 99
1uxi A - percentage of sequence identity: 99
1uxi B - percentage of sequence identity: 99
1uxj A - percentage of sequence identity: 99
1uxj C - percentage of sequence identity: 99
1uxk A - percentage of sequence identity: 99
1uxk C - percentage of sequence identity: 99