PDB: 1vca Compound: human vascular cell adhesion molecule-1 Classification: CELL ADHESION PROTEIN Entry date in PDB: 1995-09-15 Resolution [Å]: 1.80 R-Factor: 0.202

CHAIN: A SWISS-PROT/TREMBL: P19320    KEYWORD: 3D-structure    Alternative splicing    Cell adhesion    Glycoprotein    Immunoglobulin domain    Polymorphism    Repeat    Signal    Transmembrane    SCOP: b.1.1.3 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C2 set domains    Vascular cell adhesion molecule-1 (VCAM-1)    Human (Homo sapiens) SCOP: b.1.1.4 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    I set domains    Vascular cell adhesion molecule-1 (VCAM-1)    Human (Homo sapiens) GO:  integral to membrane    membrane    cell adhesion    cell-cell adhesion    CHAIN: B SWISS-PROT/TREMBL: P19320    KEYWORD: 3D-structure    Alternative splicing    Cell adhesion    Glycoprotein    Immunoglobulin domain    Polymorphism    Repeat    Signal    Transmembrane    SCOP: b.1.1.3 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C2 set domains    Vascular cell adhesion molecule-1 (VCAM-1)    Human (Homo sapiens) SCOP: b.1.1.4 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    I set domains    Vascular cell adhesion molecule-1 (VCAM-1)    Human (Homo sapiens) GO:  integral to membrane    membrane    cell adhesion    cell-cell adhesion

Image Source: PDB

Loops in ArchDB40 clusters

1vca_A_46 - HA => SUBCLASS : 2.3.1
1vca_A_124 - HA => SUBCLASS : 2.3.4
1vca_A_68 - HA => SUBCLASS : 2.3.17
1vca_A_103 - AR => SUBCLASS : 4.1.1
1vca_A_10 - AR => SUBCLASS : 4.1.1
1vca_A_103 - AR => SUBCLASS : 4.13.1

Loops in ArchDB95 clusters

1vca_A_103 - AR => SUBCLASS : 4.1.1
1vca_A_10 - AR => SUBCLASS : 4.1.1
1vca_A_103 - AR => SUBCLASS : 4.9.1
1vca_A_46 - HA => SUBCLASS : 2.3.1
1vca_A_68 - HA => SUBCLASS : 2.3.5
1vca_A_124 - HA => SUBCLASS : 2.3.7
1vca_A_68 - HA => SUBCLASS : 2.3.14

Loops not clustered in ArchDB

1vca_A_2 - AR
1vca_A_150 - AR
1vca_A_133 - AR
1vca_A_109 - AR
1vca_A_96 - AR
1vca_A_78 - AR
1vca_A_53 - AR
1vca_A_32 - AR
1vca_A_19 - AR
1vca_A_186 - AR
1vca_A_168 - HA

1ij9 A - percentage of sequence identity: 100
1vca A - percentage of sequence identity: 100
1vca B - percentage of sequence identity: 100
1vsc A - percentage of sequence identity: 100
1vsc B - percentage of sequence identity: 100