PDB: 1vi2 Compound: shikimate 5-dehydrogenase 2 Classification: OXIDOREDUCTASE Entry date in PDB: 2003-12-30 Resolution [Å]: 2.10 R-Factor: 0.234

CHAIN: A SWISS-PROT/TREMBL: P28244    KEYWORD: 3D-structure    Aromatic amino acid biosynthesis    Complete proteome    NAD    Oxidoreductase    EC: 1.1.1.- SCOP: c.2.1.7 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Aminoacid dehydrogenase-like, C-terminal domain    Putative shikimate dehydrogenase YdiB    Escherichia coli SCOP: c.58.1.5 Alpha and beta proteins (a/b)    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenase-like, N-terminal domain    Shikimate dehydrogenase-like    Putative shikimate dehydrogenase YdiB    Escherichia coli GO:  cytoplasm    shikimate 5-dehydrogenase activity    aromatic amino acid family biosynthesis, shikimate pathway    CHAIN: B SWISS-PROT/TREMBL: P28244    KEYWORD: 3D-structure    Aromatic amino acid biosynthesis    Complete proteome    NAD    Oxidoreductase    EC: 1.1.1.- SCOP: c.2.1.7 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Aminoacid dehydrogenase-like, C-terminal domain    Putative shikimate dehydrogenase YdiB    Escherichia coli SCOP: c.58.1.5 Alpha and beta proteins (a/b)    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenase-like, N-terminal domain    Shikimate dehydrogenase-like    Putative shikimate dehydrogenase YdiB    Escherichia coli GO:  cytoplasm    shikimate 5-dehydrogenase activity    aromatic amino acid family biosynthesis, shikimate pathway

Image Source: PDB

Loops in ArchDB40 clusters

1vi2_A_93 - HA => SUBCLASS : 2.1.1
1vi2_A_178 - EH => SUBCLASS : 3.1.1
1vi2_A_129 - EH => SUBCLASS : 3.2.1
1vi2_A_260 - HH => SUBCLASS : 5.1.1

Loops in ArchDB95 clusters

1vi2_A_150 - EH => SUBCLASS : 2.4.2
1vi2_A_178 - EH => SUBCLASS : 3.2.1
1vi2_A_240 - HE => SUBCLASS : 1.1.2
1vi2_A_27 - HE => SUBCLASS : 2.1.1
1vi2_A_240 - HE => SUBCLASS : 2.1.12
1vi2_A_187 - HE => SUBCLASS : 2.2.1
1vi2_A_161 - HE => SUBCLASS : 2.2.2
1vi2_A_134 - HE => SUBCLASS : 3.1.1
1vi2_A_83 - HE => SUBCLASS : 4.21.2
1vi2_A_93 - HA => SUBCLASS : 2.1.1

Loops not clustered in ArchDB

1vi2_A_63 - AR
1vi2_A_251 - EH
1vi2_A_228 - EH
1vi2_A_100 - EH
1vi2_A_80 - EH
1vi2_A_37 - EH
1vi2_A_8 - EH
1vi2_A_199 - HA
1vi2_A_49 - HE
1vi2_A_106 - HE

1npd A - percentage of sequence identity: 99
1npd B - percentage of sequence identity: 99
1o9b A - percentage of sequence identity: 99
1o9b B - percentage of sequence identity: 99
1vi2 A - percentage of sequence identity: 100
1vi2 B - percentage of sequence identity: 100