PDB: 1vio Compound: ribosomal small subunit pseudouridine synthase a Classification: LYASE Entry date in PDB: 2003-12-30 Resolution [Å]: 1.59 R-Factor: 0.196

CHAIN: A SWISS-PROT/TREMBL: P45124    KEYWORD: Complete proteome    Lyase    RNA-binding    rRNA processing    Complete proteome    Lyase    RNA-binding    rRNA processing    EC: 4.2.1.70 SCOP: d.265.1.3 Alpha and beta proteins (a+b)    Pseudouridine synthase    Pseudouridine synthase    Pseudouridine synthase RsuA/RluD    Ribosomal small subunit pseudouridine 516 synthase RsuA    Haemophilus influenzae SCOP: d.66.1.5 Alpha and beta proteins (a+b)    Alpha-L RNA-binding motif    Alpha-L RNA-binding motif    Pseudouridine synthase RsuA N-terminal domain    Pseudouridine synthase RsuA N-terminal domain    Haemophilus influenzae GO:  pseudouridine synthase activity    pseudouridylate synthase activity    RNA binding    RNA processing    CHAIN: B SWISS-PROT/TREMBL: P45124    KEYWORD: Complete proteome    Lyase    RNA-binding    rRNA processing    Complete proteome    Lyase    RNA-binding    rRNA processing    EC: 4.2.1.70 SCOP: d.265.1.3 Alpha and beta proteins (a+b)    Pseudouridine synthase    Pseudouridine synthase    Pseudouridine synthase RsuA/RluD    Ribosomal small subunit pseudouridine 516 synthase RsuA    Haemophilus influenzae SCOP: d.66.1.5 Alpha and beta proteins (a+b)    Alpha-L RNA-binding motif    Alpha-L RNA-binding motif    Pseudouridine synthase RsuA N-terminal domain    Pseudouridine synthase RsuA N-terminal domain    Haemophilus influenzae GO:  pseudouridine synthase activity    pseudouridylate synthase activity    RNA binding    RNA processing

Image Source: PDB

Loops in ArchDB40 clusters

1vio_A_185 - HE => SUBCLASS : 2.2.4
1vio_A_15 - HE => SUBCLASS : 2.4.1
1vio_A_185 - HE => SUBCLASS : 3.5.3
1vio_A_47 - HA => SUBCLASS : 2.1.1
1vio_A_27 - HA => SUBCLASS : 2.1.1
1vio_A_197 - HA => SUBCLASS : 2.3.13
1vio_A_165 - HA => SUBCLASS : 4.3.2
1vio_A_96 - HA => SUBCLASS : 8.10.1
1vio_A_219 - EH => SUBCLASS : 1.1.4
1vio_A_106 - EH => SUBCLASS : 2.1.1
1vio_A_130 - EH => SUBCLASS : 5.12.1
1vio_A_40 - AR => SUBCLASS : 3.7.1
1vio_A_40 - AR => SUBCLASS : 4.3.1
1vio_A_40 - AR => SUBCLASS : 5.4.1
1vio_A_3 - HH => SUBCLASS : 3.1.1

Loops in ArchDB95 clusters

1vio_A_106 - EH => SUBCLASS : 2.1.12
1vio_A_219 - EH => SUBCLASS : 2.2.1
1vio_A_130 - EH => SUBCLASS : 5.4.2
1vio_A_40 - AR => SUBCLASS : 2.2.1
1vio_A_40 - AR => SUBCLASS : 5.4.1
1vio_A_32 - AR => SUBCLASS : 5.16.3
1vio_A_3 - HH => SUBCLASS : 3.1.1
1vio_A_185 - HE => SUBCLASS : 1.2.11
1vio_A_15 - HE => SUBCLASS : 2.4.2
1vio_A_47 - HA => SUBCLASS : 2.1.1
1vio_A_197 - HA => SUBCLASS : 2.3.8
1vio_A_165 - HA => SUBCLASS : 4.2.1
1vio_A_96 - HA => SUBCLASS : 8.25.1

Loops not clustered in ArchDB

1vio_A_52 - AR
1vio_A_62 - AR
1vio_A_208 - AR
1vio_A_1 - EH
1vio_A_173 - EH
1vio_A_115 - HE
1vio_A_144 - HE

1vio A - percentage of sequence identity: 100
1vio B - percentage of sequence identity: 100