PDB: 1vps Compound: polyomavirus vp1 pentamer Classification: VIRUS COAT PROTEIN Entry date in PDB: 1997-05-15 Resolution [Å]: 1.90 R-Factor: 0.177

CHAIN: A SWISS-PROT/TREMBL: P49302    KEYWORD: 3D-structure    Coat protein    Late protein    SCOP: b.121.6.1 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Group I dsDNA viruses    Papovaviridae-like VP    Polyomavirus coat proteins    Murine polyoma virus, strain small-plaque 16 GO:  viral capsid    CHAIN: B SWISS-PROT/TREMBL: P49302    KEYWORD: 3D-structure    Coat protein    Late protein    SCOP: b.121.6.1 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Group I dsDNA viruses    Papovaviridae-like VP    Polyomavirus coat proteins    Murine polyoma virus, strain small-plaque 16 GO:  viral capsid    CHAIN: C SWISS-PROT/TREMBL: P49302    KEYWORD: 3D-structure    Coat protein    Late protein    SCOP: b.121.6.1 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Group I dsDNA viruses    Papovaviridae-like VP    Polyomavirus coat proteins    Murine polyoma virus, strain small-plaque 16 GO:  viral capsid    CHAIN: D SWISS-PROT/TREMBL: P49302    KEYWORD: 3D-structure    Coat protein    Late protein    SCOP: b.121.6.1 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Group I dsDNA viruses    Papovaviridae-like VP    Polyomavirus coat proteins    Murine polyoma virus, strain small-plaque 16 GO:  viral capsid    CHAIN: E SWISS-PROT/TREMBL: P49302    KEYWORD: 3D-structure    Coat protein    Late protein    SCOP: b.121.6.1 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Group I dsDNA viruses    Papovaviridae-like VP    Polyomavirus coat proteins    Murine polyoma virus, strain small-plaque 16 GO:  viral capsid

Image Source: PDB

Loops in ArchDB40 clusters

1vps_A_144 - HA => SUBCLASS : 4.1.2
1vps_A_277 - HA => SUBCLASS : 5.5.1

Loops in ArchDB95 clusters

1vps_A_144 - HA => SUBCLASS : 4.1.2
1vps_A_144 - HA => SUBCLASS : 4.1.5

Loops not clustered in ArchDB

1vps_A_36 - AR
1vps_A_297 - AR
1vps_A_272 - AR
1vps_A_261 - AR
1vps_A_237 - AR
1vps_A_227 - AR
1vps_A_213 - AR
1vps_A_161 - AR
1vps_A_151 - AR
1vps_A_117 - AR
1vps_A_99 - AR
1vps_A_46 - AR
1vps_A_172 - EH
1vps_A_193 - HE

1cn3 A - percentage of sequence identity: 100
1cn3 B - percentage of sequence identity: 100
1cn3 C - percentage of sequence identity: 100
1cn3 D - percentage of sequence identity: 100
1cn3 E - percentage of sequence identity: 100
1sid A - percentage of sequence identity: 100
1sid B - percentage of sequence identity: 100
1sid C - percentage of sequence identity: 100
1sid D - percentage of sequence identity: 100
1sid E - percentage of sequence identity: 100
1sid F - percentage of sequence identity: 100
1sie A - percentage of sequence identity: 100
1sie B - percentage of sequence identity: 100
1sie C - percentage of sequence identity: 100
1sie D - percentage of sequence identity: 100
1sie E - percentage of sequence identity: 100
1sie F - percentage of sequence identity: 100
1vpn A - percentage of sequence identity: 100
1vpn B - percentage of sequence identity: 100
1vpn C - percentage of sequence identity: 100
1vpn D - percentage of sequence identity: 100
1vpn E - percentage of sequence identity: 100
1vps A - percentage of sequence identity: 100
1vps B - percentage of sequence identity: 100
1vps C - percentage of sequence identity: 100
1vps D - percentage of sequence identity: 100
1vps E - percentage of sequence identity: 100