ArchDB - Biological DataBase of Protein Loops

Information on 1vrt

PDB: 1vrt
Compound: hiv-1 reverse transcriptase
Classification: NUCLEOTIDYLTRANSFERASE
Entry date in PDB: 1996-04-03
Resolution [Å]: 2.20
R-Factor: 0.186

CHAIN: A

SWISS-PROT/TREMBL: P04585
   KEYWORD: 3D-structure    AIDS    Aspartyl protease    Endonuclease    Hydrolase    Metal-binding    Nuclease    Polyprotein    RNA-directed DNA polymerase    Transferase    Zinc    Zinc-finger
EC: 2.7.7.49
SCOP: c.55.3.1 Alpha and beta proteins (a/b)    Ribonuclease H-like motif    Ribonuclease H-like    Ribonuclease H    HIV RNase H (Domain of reverse transcriptase)    Human immunodeficiency virus type 1
SCOP: e.8.1.2 Multi-domain proteins (alpha and beta)    DNA/RNA polymerases    DNA/RNA polymerases    Reverse transcriptase    HIV-1 reverse transcriptase    Human immunodeficiency virus type 1
GO:  aspartic-type endopeptidase activity    DNA binding    integrase activity    nucleic acid binding    ribonuclease H activity    RNA binding    RNA-directed DNA polymerase activity    zinc ion binding    DNA integration    DNA recombination    proteolysis and peptidolysis    RNA-dependent DNA replication

CHAIN: B

SWISS-PROT/TREMBL: P04585
   KEYWORD: 3D-structure    AIDS    Aspartyl protease    Endonuclease    Hydrolase    Metal-binding    Nuclease    Polyprotein    RNA-directed DNA polymerase    Transferase    Zinc    Zinc-finger
EC: 2.7.7.49
SCOP: e.8.1.2 Multi-domain proteins (alpha and beta)    DNA/RNA polymerases    DNA/RNA polymerases    Reverse transcriptase    HIV-1 reverse transcriptase    Human immunodeficiency virus type 1
GO:  aspartic-type endopeptidase activity    DNA binding    integrase activity    nucleic acid binding    ribonuclease H activity    RNA binding    RNA-directed DNA polymerase activity    zinc ion binding    DNA integration    DNA recombination    proteolysis and peptidolysis    RNA-dependent DNA replication

Image Source: PDB

Stored Loops of 1vrt

Loops in ArchDB95 clusters

1vrt_A_361 - EH => SUBCLASS : 1.1.1
1vrt_A_361 - EH => SUBCLASS : 1.1.11
1vrt_A_512 - EH => SUBCLASS : 2.1.2
1vrt_A_292 - EH => SUBCLASS : 3.1.2
1vrt_A_186 - EH => SUBCLASS : 3.4.1
1vrt_A_388 - EH => SUBCLASS : 3.7.4
1vrt_A_143 - EH => SUBCLASS : 7.30.1
1vrt_A_105 - AR => SUBCLASS : 19.4.1
1vrt_A_516 - HE => SUBCLASS : 2.2.1
1vrt_A_28 - HE => SUBCLASS : 2.4.1
1vrt_A_500 - HE => SUBCLASS : 3.3.2
1vrt_A_500 - HE => SUBCLASS : 3.3.8
1vrt_A_156 - HE => SUBCLASS : 3.4.2
1vrt_A_364 - HE => SUBCLASS : 4.5.1
1vrt_A_227 - HA => SUBCLASS : 2.1.1
1vrt_A_232 - HA => SUBCLASS : 2.2.1
1vrt_A_179 - HA => SUBCLASS : 2.3.1
1vrt_A_326 - HA => SUBCLASS : 2.4.2
1vrt_A_456 - HA => SUBCLASS : 4.3.4

Loops in ArchDB-EC clusters

1vrt_B_364 - HE => SUBCLASS : 3.11.1

Loops not clustered in ArchDB

1vrt_A_414 - AR
1vrt_A_239 - AR
1vrt_A_347 - AR
1vrt_A_47 - AR
1vrt_B_47 - AR
1vrt_B_105 - AR
1vrt_A_464 - EH
1vrt_A_492 - EH
1vrt_A_71 - EH
1vrt_B_71 - EH
1vrt_A_252 - EH
1vrt_B_232 - EH
1vrt_B_388 - EH
1vrt_B_347 - EH
1vrt_B_186 - EH
1vrt_B_413 - EH
1vrt_B_142 - EH
1vrt_B_130 - HA
1vrt_B_336 - HA
1vrt_B_179 - HA
1vrt_B_326 - HA
1vrt_B_60 - HA
1vrt_A_439 - HA
1vrt_A_130 - HA
1vrt_B_395 - HE
1vrt_B_195 - HE
1vrt_A_474 - HE
1vrt_A_395 - HE
1vrt_A_297 - HE
1vrt_A_277 - HE
1vrt_B_28 - HE
1vrt_B_78 - HE
1vrt_B_161 - HE
1vrt_A_78 - HE
1vrt_A_195 - HE
1vrt_B_297 - HE
1vrt_A_254 - HH
1vrt_B_277 - HH
1vrt_B_254 - HH
1vrt_B_155 - HH

Homologous structures to 1vrt classified in ArchDB

1bqm A - percentage of sequence identity: 98
1bqm B - percentage of sequence identity: 99
1bqn A - percentage of sequence identity: 98
1bqn B - percentage of sequence identity: 98
1c0t A - percentage of sequence identity: 100
1c0t B - percentage of sequence identity: 100
1c0u A - percentage of sequence identity: 100
1c0u B - percentage of sequence identity: 100
1c1b A - percentage of sequence identity: 100
1c1b B - percentage of sequence identity: 99
1c1c A - percentage of sequence identity: 100
1c1c B - percentage of sequence identity: 100
1dlo A - percentage of sequence identity: 98
1dlo B - percentage of sequence identity: 99
1dtq A - percentage of sequence identity: 100
1dtq B - percentage of sequence identity: 100
1dtt A - percentage of sequence identity: 100
1dtt B - percentage of sequence identity: 100
1eet A - percentage of sequence identity: 98
1eet B - percentage of sequence identity: 99
1ep4 A - percentage of sequence identity: 100
1ep4 B - percentage of sequence identity: 100
1fk9 A - percentage of sequence identity: 100
1fk9 B - percentage of sequence identity: 100
1fko A - percentage of sequence identity: 99
1fko B - percentage of sequence identity: 99
1fkp A - percentage of sequence identity: 99
1fkp B - percentage of sequence identity: 99
1har - - percentage of sequence identity: 94
1hmv A - percentage of sequence identity: 98
1hmv B - percentage of sequence identity: 99
1hmv C - percentage of sequence identity: 98
1hmv D - percentage of sequence identity: 99
1hmv E - percentage of sequence identity: 98
1hmv F - percentage of sequence identity: 99
1hmv G - percentage of sequence identity: 98
1hmv H - percentage of sequence identity: 99
1hni A - percentage of sequence identity: 98
1hni B - percentage of sequence identity: 99
1hnv A - percentage of sequence identity: 98
1hnv B - percentage of sequence identity: 99
1hpz A - percentage of sequence identity: 98
1hpz B - percentage of sequence identity: 99
1hqe A - percentage of sequence identity: 98
1hqe B - percentage of sequence identity: 99
1hqu A - percentage of sequence identity: 98
1hqu B - percentage of sequence identity: 99
1hrh B - percentage of sequence identity: 96
1hvu A - percentage of sequence identity: 99
1hvu B - percentage of sequence identity: 99
1hvu D - percentage of sequence identity: 99
1hvu E - percentage of sequence identity: 99
1hvu G - percentage of sequence identity: 99
1hvu H - percentage of sequence identity: 99
1hvu J - percentage of sequence identity: 99
1hvu K - percentage of sequence identity: 99
1hys A - percentage of sequence identity: 98
1hys B - percentage of sequence identity: 99
1ikv A - percentage of sequence identity: 98
1ikv B - percentage of sequence identity: 99
1ikw A - percentage of sequence identity: 98
1ikw B - percentage of sequence identity: 99
1ikx A - percentage of sequence identity: 98
1ikx B - percentage of sequence identity: 99
1iky A - percentage of sequence identity: 98
1iky B - percentage of sequence identity: 99
1j5o A - percentage of sequence identity: 98
1j5o B - percentage of sequence identity: 99
1jkh A - percentage of sequence identity: 99
1jkh B - percentage of sequence identity: 99
1jla A - percentage of sequence identity: 99
1jla B - percentage of sequence identity: 99
1jlb A - percentage of sequence identity: 99
1jlb B - percentage of sequence identity: 99
1jlc A - percentage of sequence identity: 99
1jlc B - percentage of sequence identity: 99
1jle A - percentage of sequence identity: 99
1jle B - percentage of sequence identity: 99
1jlf A - percentage of sequence identity: 99
1jlf B - percentage of sequence identity: 99
1jlg A - percentage of sequence identity: 99
1jlg B - percentage of sequence identity: 99
1jlq A - percentage of sequence identity: 100
1jlq B - percentage of sequence identity: 100
1klm A - percentage of sequence identity: 99
1klm B - percentage of sequence identity: 100
1lw0 A - percentage of sequence identity: 99
1lw0 B - percentage of sequence identity: 99
1lw2 A - percentage of sequence identity: 99
1lw2 B - percentage of sequence identity: 99
1lwc A - percentage of sequence identity: 99
1lwc B - percentage of sequence identity: 99
1lwe A - percentage of sequence identity: 99
1lwe B - percentage of sequence identity: 99
1lwf A - percentage of sequence identity: 99
1lwf B - percentage of sequence identity: 98
1mu2 A - percentage of sequence identity: 60
1mu2 B - percentage of sequence identity: 60
1n5y A - percentage of sequence identity: 98
1n5y B - percentage of sequence identity: 99
1n6q A - percentage of sequence identity: 98
1n6q B - percentage of sequence identity: 99
1o1w A - percentage of sequence identity: 100
1qe1 A - percentage of sequence identity: 98
1qe1 B - percentage of sequence identity: 99
1r0a A - percentage of sequence identity: 98
1r0a B - percentage of sequence identity: 99
1rdh A - percentage of sequence identity: 96
1rdh B - percentage of sequence identity: 96
1rev A - percentage of sequence identity: 99
1rev B - percentage of sequence identity: 100
1rt1 A - percentage of sequence identity: 99
1rt1 B - percentage of sequence identity: 100
1rt2 A - percentage of sequence identity: 99
1rt2 B - percentage of sequence identity: 100
1rt3 A - percentage of sequence identity: 99
1rt3 B - percentage of sequence identity: 99
1rt4 A - percentage of sequence identity: 99
1rt4 B - percentage of sequence identity: 100
1rt5 A - percentage of sequence identity: 99
1rt5 B - percentage of sequence identity: 100
1rt6 A - percentage of sequence identity: 99
1rt6 B - percentage of sequence identity: 100
1rt7 A - percentage of sequence identity: 99
1rt7 B - percentage of sequence identity: 100
1rtd A - percentage of sequence identity: 99
1rtd B - percentage of sequence identity: 100
1rtd C - percentage of sequence identity: 99
1rtd D - percentage of sequence identity: 100
1rth A - percentage of sequence identity: 100
1rth B - percentage of sequence identity: 100
1rti A - percentage of sequence identity: 100
1rti B - percentage of sequence identity: 100
1rtj A - percentage of sequence identity: 100
1rtj B - percentage of sequence identity: 100
1s1t A - percentage of sequence identity: 99
1s1t B - percentage of sequence identity: 99
1s1u A - percentage of sequence identity: 99
1s1u B - percentage of sequence identity: 99
1s1v A - percentage of sequence identity: 99
1s1v B - percentage of sequence identity: 99
1s1w A - percentage of sequence identity: 99
1s1w B - percentage of sequence identity: 99
1s1x A - percentage of sequence identity: 99
1s1x B - percentage of sequence identity: 99
1s6p A - percentage of sequence identity: 98
1s6p B - percentage of sequence identity: 99
1s6q A - percentage of sequence identity: 98
1s6q B - percentage of sequence identity: 99
1s9e A - percentage of sequence identity: 98
1s9e B - percentage of sequence identity: 99
1s9g A - percentage of sequence identity: 98
1s9g B - percentage of sequence identity: 99
1suq A - percentage of sequence identity: 98
1suq B - percentage of sequence identity: 99
1sv5 A - percentage of sequence identity: 98
1sv5 B - percentage of sequence identity: 99
1t03 A - percentage of sequence identity: 98
1t03 B - percentage of sequence identity: 99
1t05 A - percentage of sequence identity: 98
1t05 B - percentage of sequence identity: 99
1tkt A - percentage of sequence identity: 100
1tkt B - percentage of sequence identity: 100
1tkx A - percentage of sequence identity: 100
1tkx B - percentage of sequence identity: 100
1tkz A - percentage of sequence identity: 100
1tkz B - percentage of sequence identity: 100
1tl1 A - percentage of sequence identity: 100
1tl1 B - percentage of sequence identity: 100
1tl3 A - percentage of sequence identity: 100
1tl3 B - percentage of sequence identity: 100
1tv6 A - percentage of sequence identity: 98
1tv6 B - percentage of sequence identity: 99
1tvr A - percentage of sequence identity: 98
1tvr B - percentage of sequence identity: 99
1uwb A - percentage of sequence identity: 98
1uwb B - percentage of sequence identity: 99
1vrt A - percentage of sequence identity: 100
1vrt B - percentage of sequence identity: 100
1vru A - percentage of sequence identity: 100
1vru B - percentage of sequence identity: 100
2b5j A - percentage of sequence identity: 98
2b5j B - percentage of sequence identity: 99
2b6a A - percentage of sequence identity: 98
2b6a B - percentage of sequence identity: 99
2ban A - percentage of sequence identity: 98
2ban B - percentage of sequence identity: 99
2be2 A - percentage of sequence identity: 98
2be2 B - percentage of sequence identity: 99
2hmi A - percentage of sequence identity: 98
2hmi B - percentage of sequence identity: 99
3hvt A - percentage of sequence identity: 99
3hvt B - percentage of sequence identity: 99