PDB: 1xo1 Compound: 5'-exonuclease Classification: HYDROLASE Entry date in PDB: 1999-01-06 Resolution [Å]: 2.50 R-Factor: 0.226

CHAIN: A SWISS-PROT/TREMBL: P06229    KEYWORD: 3D-structure    Exonuclease    Hydrolase    Nuclease    EC: 3.1.11.3 SCOP: a.60.7.1 All alpha proteins    SAM domain-like    5' to 3' exonuclease, C-terminal subdomain    5' to 3' exonuclease, C-terminal subdomain    T5 5'-exonuclease    Bacteriophage T5 SCOP: c.120.1.2 Alpha and beta proteins (a/b)    PIN domain-like    PIN domain-like    5' to 3' exonuclease catalytic domain    T5 5'-exonuclease    Bacteriophage T5 GO:  5'-3' exonuclease activity    DNA binding    nuclease activity    CHAIN: B SWISS-PROT/TREMBL: P06229    KEYWORD: 3D-structure    Exonuclease    Hydrolase    Nuclease    EC: 3.1.11.3 SCOP: a.60.7.1 All alpha proteins    SAM domain-like    5' to 3' exonuclease, C-terminal subdomain    5' to 3' exonuclease, C-terminal subdomain    T5 5'-exonuclease    Bacteriophage T5 SCOP: c.120.1.2 Alpha and beta proteins (a/b)    PIN domain-like    PIN domain-like    5' to 3' exonuclease catalytic domain    T5 5'-exonuclease    Bacteriophage T5 GO:  5'-3' exonuclease activity    DNA binding    nuclease activity

Image Source: PDB

Loops in ArchDB40 clusters

1xo1_A_44 - HE => SUBCLASS : 1.1.8
1xo1_A_105 - HE => SUBCLASS : 2.6.2
1xo1_A_164 - HA => SUBCLASS : 4.1.2
1xo1_A_164 - HA => SUBCLASS : 6.1.1
1xo1_A_174 - EH => SUBCLASS : 0.1.36
1xo1_A_174 - EH => SUBCLASS : 0.1.42
1xo1_A_174 - EH => SUBCLASS : 0.1.50
1xo1_A_121 - EH => SUBCLASS : 4.23.1
1xo1_A_121 - EH => SUBCLASS : 6.20.1

Loops in ArchDB95 clusters

1xo1_A_174 - EH => SUBCLASS : 0.1.36
1xo1_A_121 - EH => SUBCLASS : 4.14.2
1xo1_A_121 - EH => SUBCLASS : 6.39.1
1xo1_A_250 - HH => SUBCLASS : 1.1.71
1xo1_A_129 - HE => SUBCLASS : 2.3.16
1xo1_A_129 - HE => SUBCLASS : 2.3.18
1xo1_A_105 - HE => SUBCLASS : 2.6.1
1xo1_A_164 - HA => SUBCLASS : 4.1.1

Loops in ArchDB-EC clusters

1xo1_A_44 - HE => SUBCLASS : 1.2.2

Loops not clustered in ArchDB

1xo1_A_21 - EH
1xo1_A_60 - EH
1xo1_A_147 - HA
1xo1_A_147 - HA
1xo1_A_164 - HA
1xo1_A_189 - HH
1xo1_A_180 - HH
1xo1_A_227 - HH
1xo1_A_241 - HH
1xo1_A_262 - HH
1xo1_A_73 - HH
1xo1_A_27 - HH
1xo1_A_214 - HH

1exn A - percentage of sequence identity: 99
1exn B - percentage of sequence identity: 99
1ut5 A - percentage of sequence identity: 99
1ut5 B - percentage of sequence identity: 99
1ut8 A - percentage of sequence identity: 99
1ut8 B - percentage of sequence identity: 99
1xo1 A - percentage of sequence identity: 100
1xo1 B - percentage of sequence identity: 100