PDB: 2tod Compound: ornithine decarboxylase Classification: LYASE Entry date in PDB: 1999-11-17 Resolution [Å]: 2.00 R-Factor: 0.212

CHAIN: A SWISS-PROT/TREMBL: P07805    KEYWORD: 3D-structure    Decarboxylase    Lyase    Polyamine biosynthesis    Pyridoxal phosphate    EC: 4.1.1.17 SCOP: b.49.2.3 All beta proteins    Domain of alpha and beta subunits of F1 ATP synthase-like    Alanine racemase C-terminal domain-like    Eukaryotic ODC-like    Eukaryotic ornithine decarboxylase (ODC)    Trypanosoma brucei SCOP: b.49.2.3 All beta proteins    Domain of alpha and beta subunits of F1 ATP synthase-like    Alanine racemase C-terminal domain-like    Eukaryotic ODC-like    Eukaryotic ornithine decarboxylase (ODC)    Trypanosoma brucei SCOP: c.1.6.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    PLP-binding barrel    Alanine racemase-like, N-terminal domain    Eukaryotic ornithine decarboxylase    Trypanosoma brucei GO:  catalytic activity    polyamine biosynthesis    CHAIN: B SWISS-PROT/TREMBL: P07805    KEYWORD: 3D-structure    Decarboxylase    Lyase    Polyamine biosynthesis    Pyridoxal phosphate    EC: 4.1.1.17 SCOP: b.49.2.3 All beta proteins    Domain of alpha and beta subunits of F1 ATP synthase-like    Alanine racemase C-terminal domain-like    Eukaryotic ODC-like    Eukaryotic ornithine decarboxylase (ODC)    Trypanosoma brucei SCOP: b.49.2.3 All beta proteins    Domain of alpha and beta subunits of F1 ATP synthase-like    Alanine racemase C-terminal domain-like    Eukaryotic ODC-like    Eukaryotic ornithine decarboxylase (ODC)    Trypanosoma brucei SCOP: c.1.6.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    PLP-binding barrel    Alanine racemase-like, N-terminal domain    Eukaryotic ornithine decarboxylase    Trypanosoma brucei GO:  catalytic activity    polyamine biosynthesis    CHAIN: C SWISS-PROT/TREMBL: P07805    KEYWORD: 3D-structure    Decarboxylase    Lyase    Polyamine biosynthesis    Pyridoxal phosphate    EC: 4.1.1.17 SCOP: b.49.2.3 All beta proteins    Domain of alpha and beta subunits of F1 ATP synthase-like    Alanine racemase C-terminal domain-like    Eukaryotic ODC-like    Eukaryotic ornithine decarboxylase (ODC)    Trypanosoma brucei SCOP: b.49.2.3 All beta proteins    Domain of alpha and beta subunits of F1 ATP synthase-like    Alanine racemase C-terminal domain-like    Eukaryotic ODC-like    Eukaryotic ornithine decarboxylase (ODC)    Trypanosoma brucei SCOP: c.1.6.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    PLP-binding barrel    Alanine racemase-like, N-terminal domain    Eukaryotic ornithine decarboxylase    Trypanosoma brucei GO:  catalytic activity    polyamine biosynthesis    CHAIN: D SWISS-PROT/TREMBL: P07805    KEYWORD: 3D-structure    Decarboxylase    Lyase    Polyamine biosynthesis    Pyridoxal phosphate    EC: 4.1.1.17 SCOP: b.49.2.3 All beta proteins    Domain of alpha and beta subunits of F1 ATP synthase-like    Alanine racemase C-terminal domain-like    Eukaryotic ODC-like    Eukaryotic ornithine decarboxylase (ODC)    Trypanosoma brucei SCOP: b.49.2.3 All beta proteins    Domain of alpha and beta subunits of F1 ATP synthase-like    Alanine racemase C-terminal domain-like    Eukaryotic ODC-like    Eukaryotic ornithine decarboxylase (ODC)    Trypanosoma brucei SCOP: c.1.6.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    PLP-binding barrel    Alanine racemase-like, N-terminal domain    Eukaryotic ornithine decarboxylase    Trypanosoma brucei GO:  catalytic activity    polyamine biosynthesis

Image Source: PDB

Loops in ArchDB95 clusters

2tod_A_86 - EH => SUBCLASS : 2.1.2
2tod_A_130 - EH => SUBCLASS : 2.14.1
2tod_A_62 - EH => SUBCLASS : 6.44.1
2tod_A_365 - AR => SUBCLASS : 6.40.1
2tod_A_351 - HA => SUBCLASS : 7.7.1

Loops not clustered in ArchDB

2tod_A_339 - AR
2tod_A_380 - AR
2tod_A_231 - EH
2tod_A_40 - EH
2tod_A_108 - EH
2tod_A_150 - EH
2tod_A_190 - EH
2tod_A_313 - EH
2tod_A_270 - EH
2tod_A_284 - HA
2tod_A_277 - HE
2tod_A_248 - HE
2tod_A_206 - HE
2tod_A_174 - HE
2tod_A_136 - HE
2tod_A_117 - HE
2tod_A_92 - HE
2tod_A_74 - HE
2tod_A_45 - HE
2tod_A_328 - HE

1d7k A - percentage of sequence identity: 66
1d7k B - percentage of sequence identity: 66
1f3t A - percentage of sequence identity: 99
1f3t B - percentage of sequence identity: 99
1f3t C - percentage of sequence identity: 99
1f3t D - percentage of sequence identity: 99
1njj A - percentage of sequence identity: 99
1njj B - percentage of sequence identity: 99
1njj C - percentage of sequence identity: 99
1njj D - percentage of sequence identity: 99
1qu4 A - percentage of sequence identity: 99
1qu4 B - percentage of sequence identity: 99
1qu4 C - percentage of sequence identity: 99
1qu4 D - percentage of sequence identity: 99
1szr A - percentage of sequence identity: 99
1szr B - percentage of sequence identity: 99
1szr C - percentage of sequence identity: 99
1szr D - percentage of sequence identity: 99
2tod A - percentage of sequence identity: 100
2tod B - percentage of sequence identity: 100
2tod C - percentage of sequence identity: 100
2tod D - percentage of sequence identity: 100
7odc A - percentage of sequence identity: 63