PDB: 3mdd Compound: Medium chain acyl-coa dehydrogenase (mcad) Classification: OXIDOREDUCTASE Entry date in PDB: 1994-09-30 Resolution [Å]: 2.40 R-Factor: 0.173

CHAIN: A SWISS-PROT/TREMBL: P41367    KEYWORD: 3D-structure    FAD    Fatty acid metabolism    Flavoprotein    Mitochondrion    Oxidoreductase    Transit peptide    EC: 1.3.99.3 SCOP: a.29.3.1 All alpha proteins    Bromodomain-like    Acyl-CoA dehydrogenase C-terminal domain-like    Medium chain acyl-CoA dehydrogenase-like, C-terminal domain    Medium chain acyl-CoA dehydrogenase, C-domain    Pig (Sus scrofa) SCOP: e.6.1.1 Multi-domain proteins (alpha and beta)    Acyl-CoA dehydrogenase NM domain-like    Acyl-CoA dehydrogenase NM domain-like    Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains    Medium chain acyl-CoA dehydrogenase, NM domains    Pig (Sus scrofa) GO:  acyl-CoA dehydrogenase activity    oxidoreductase activity    electron transport    CHAIN: B SWISS-PROT/TREMBL: P41367    KEYWORD: 3D-structure    FAD    Fatty acid metabolism    Flavoprotein    Mitochondrion    Oxidoreductase    Transit peptide    EC: 1.3.99.3 SCOP: a.29.3.1 All alpha proteins    Bromodomain-like    Acyl-CoA dehydrogenase C-terminal domain-like    Medium chain acyl-CoA dehydrogenase-like, C-terminal domain    Medium chain acyl-CoA dehydrogenase, C-domain    Pig (Sus scrofa) SCOP: e.6.1.1 Multi-domain proteins (alpha and beta)    Acyl-CoA dehydrogenase NM domain-like    Acyl-CoA dehydrogenase NM domain-like    Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains    Medium chain acyl-CoA dehydrogenase, NM domains    Pig (Sus scrofa) GO:  acyl-CoA dehydrogenase activity    oxidoreductase activity    electron transport

Image Source: PDB

Loops in ArchDB40 clusters

3mdd_A_282 - HA => SUBCLASS : 2.1.1
3mdd_A_286 - EH => SUBCLASS : 4.22.2
3mdd_A_131 - AR => SUBCLASS : 15.1.1
3mdd_A_77 - HH => SUBCLASS : 1.2.4
3mdd_A_92 - HH => SUBCLASS : 2.1.28
3mdd_A_292 - HH => SUBCLASS : 3.1.4
3mdd_A_362 - HH => SUBCLASS : 4.22.1
3mdd_A_326 - HH => SUBCLASS : 9.2.1

Loops in ArchDB95 clusters

3mdd_A_286 - EH => SUBCLASS : 4.16.2
3mdd_A_193 - AR => SUBCLASS : 5.63.1
3mdd_A_131 - AR => SUBCLASS : 15.1.1
3mdd_A_77 - HH => SUBCLASS : 1.2.2
3mdd_A_92 - HH => SUBCLASS : 2.4.11
3mdd_A_292 - HH => SUBCLASS : 3.1.8
3mdd_A_362 - HH => SUBCLASS : 4.34.1
3mdd_A_326 - HH => SUBCLASS : 9.10.1
3mdd_A_282 - HA => SUBCLASS : 2.1.1

Loops not clustered in ArchDB

3mdd_A_157 - AR
3mdd_A_175 - EH
3mdd_A_222 - EH
3mdd_A_150 - HA
3mdd_A_206 - HA
3mdd_A_244 - HE
3mdd_A_190 - HE
3mdd_A_114 - HE
3mdd_A_18 - HH
3mdd_A_36 - HH
3mdd_A_50 - HH

1egc A - percentage of sequence identity: 88
1egc B - percentage of sequence identity: 88
1egc C - percentage of sequence identity: 88
1egc D - percentage of sequence identity: 88
1egd A - percentage of sequence identity: 88
1egd B - percentage of sequence identity: 88
1egd C - percentage of sequence identity: 88
1egd D - percentage of sequence identity: 88
1ege A - percentage of sequence identity: 89
1ege B - percentage of sequence identity: 89
1ege C - percentage of sequence identity: 89
1ege D - percentage of sequence identity: 89
1t9g A - percentage of sequence identity: 89
1t9g B - percentage of sequence identity: 89
1t9g C - percentage of sequence identity: 89
1t9g D - percentage of sequence identity: 89
1udy A - percentage of sequence identity: 100
1udy B - percentage of sequence identity: 100
1udy C - percentage of sequence identity: 100
1udy D - percentage of sequence identity: 100
2a1t A - percentage of sequence identity: 89
2a1t B - percentage of sequence identity: 89
2a1t C - percentage of sequence identity: 89
2a1t D - percentage of sequence identity: 89
3mdd A - percentage of sequence identity: 100
3mdd B - percentage of sequence identity: 100
3mde A - percentage of sequence identity: 100
3mde B - percentage of sequence identity: 100