PDB: 3rub
Compound: Ribulose 1,5-bisphosphate carboxylase/oxygenase (f
Classification: LYASE(CARBON-CARBON)
Entry date in PDB: 1992-10-15
Resolution [Å]: 2.00
R-Factor: 0.194
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CHAIN: L
SWISS-PROT/TREMBL:
P00876
KEYWORD: 3D-structure Acetylation Carbon dioxide fixation Chloroplast Lyase Methylation Monooxygenase Oxidoreductase Photorespiration Photosynthesis EC: 4.1.1.39
SCOP: c.1.14.1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Tobacco (Nicotiana tabacum), variant turkish samsun
SCOP: d.58.9.1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase Tobacco (Nicotiana tabacum), variant turkish samsun
GO: ribulose bisphosphate carboxylase complex (sensu Magnoliophyta) ribulose-bisphosphate carboxylase activity carbon utilization by fixation of carbon dioxide CHAIN: S
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Image Source: PDB
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Loops in ArchDB95 clusters
3rub_S_68 - EH => SUBCLASS : 9.13.1
3rub_L_366 - AR => SUBCLASS : 6.15.1
3rub_L_142 - HH => SUBCLASS : 7.18.1
3rub_S_23 - HE => SUBCLASS : 1.1.1
3rub_S_80 - HE => SUBCLASS : 4.1.1
3rub_S_98 - HA => SUBCLASS : 4.1.2
Loops in ArchDB-EC clusters
3rub_S_80 - HE => SUBCLASS : 4.1.1
Loops not clustered in ArchDB
3rub_L_399 - EH
3rub_L_375 - EH
3rub_L_325 - EH
3rub_L_308 - EH
3rub_L_290 - EH
3rub_L_264 - EH
3rub_L_237 - EH
3rub_L_199 - EH
3rub_L_169 - EH
3rub_L_130 - EH
3rub_L_97 - EH
3rub_L_36 - EH
3rub_S_98 - HA
3rub_S_39 - HA
3rub_L_83 - HA
3rub_S_39 - HA
3rub_L_353 - HA
3rub_L_77 - HE
3rub_L_387 - HE
3rub_L_336 - HE
3rub_L_311 - HE
3rub_L_298 - HE
3rub_L_274 - HE
3rub_L_155 - HE
3rub_L_113 - HE
3rub_L_182 - HE
3rub_L_214 - HE
3rub_L_247 - HE
3rub_L_50 - HH
3rub_L_413 - HH
3rub_L_437 - HH
3rub_L_269 - HH
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Homologous structures to 3rub classified in ArchDB
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1aa1 C - percentage of sequence identity: 76
1aa1 F - percentage of sequence identity: 76
1aa1 I - percentage of sequence identity: 76
1aa1 S - percentage of sequence identity: 76
1aus S - percentage of sequence identity: 76
1aus T - percentage of sequence identity: 76
1aus U - percentage of sequence identity: 76
1aus V - percentage of sequence identity: 76
1ej7 S - percentage of sequence identity: 100
1ir1 T - percentage of sequence identity: 74
1ir1 U - percentage of sequence identity: 74
1ir1 V - percentage of sequence identity: 74
1rbl A - percentage of sequence identity: 80
1rbo C - percentage of sequence identity: 76
1rbo F - percentage of sequence identity: 76
1rbo I - percentage of sequence identity: 76
1rbo S - percentage of sequence identity: 76
1rco C - percentage of sequence identity: 76
1rco F - percentage of sequence identity: 76
1rco I - percentage of sequence identity: 76
1rco M - percentage of sequence identity: 76
1rco P - percentage of sequence identity: 76
1rco S - percentage of sequence identity: 76
1rco T - percentage of sequence identity: 76
1rco W - percentage of sequence identity: 76
1rcx C - percentage of sequence identity: 76
1rcx F - percentage of sequence identity: 76
1rcx I - percentage of sequence identity: 76
1rcx M - percentage of sequence identity: 76
1rcx P - percentage of sequence identity: 76
1rcx S - percentage of sequence identity: 76
1rcx T - percentage of sequence identity: 76
1rcx W - percentage of sequence identity: 76
1rlc S - percentage of sequence identity: 100
1rld S - percentage of sequence identity: 100
1rld T - percentage of sequence identity: 100
1rxo C - percentage of sequence identity: 76
1rxo F - percentage of sequence identity: 76
1rxo I - percentage of sequence identity: 76
1rxo S - percentage of sequence identity: 76
1upm C - percentage of sequence identity: 76
1upm F - percentage of sequence identity: 76
1upm I - percentage of sequence identity: 76
1upm M - percentage of sequence identity: 76
1upm P - percentage of sequence identity: 76
1upm S - percentage of sequence identity: 76
1upm T - percentage of sequence identity: 76
1upm W - percentage of sequence identity: 76
1upp I - percentage of sequence identity: 76
1upp J - percentage of sequence identity: 76
1upp K - percentage of sequence identity: 76
1upp L - percentage of sequence identity: 76
1wdd S - percentage of sequence identity: 77
1wdd W - percentage of sequence identity: 77
4rub S - percentage of sequence identity: 99
4rub T - percentage of sequence identity: 99
4rub U - percentage of sequence identity: 99
4rub V - percentage of sequence identity: 99
8ruc A - percentage of sequence identity: 92
8ruc I - percentage of sequence identity: 76
8ruc J - percentage of sequence identity: 76
8ruc K - percentage of sequence identity: 76
8ruc L - percentage of sequence identity: 76
