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Information on 3tmk
PDB: 3tmk
Compound: thymidylate kinase
Classification: KINASE
Entry date in PDB: 1999-02-16
Resolution [Å]: 2.00
R-Factor: 0.209


CHAIN: A
SWISS-PROT/TREMBL: P00572
   KEYWORD: 3D-structure    ATP-binding    Kinase    Nucleotide biosynthesis    Transferase   
EC: 2.7.4.9
SCOP: c.37.1.1 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    Nucleotide and nucleoside kinases    Thymidylate kinase    Baker's yeast (Saccharomyces cerevisiae)
GO:  ATP binding    thymidylate kinase activity    dTDP biosynthesis    dTTP biosynthesis   


CHAIN: B
SWISS-PROT/TREMBL: P00572
   KEYWORD: 3D-structure    ATP-binding    Kinase    Nucleotide biosynthesis    Transferase   
EC: 2.7.4.9
SCOP: c.37.1.1 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    Nucleotide and nucleoside kinases    Thymidylate kinase    Baker's yeast (Saccharomyces cerevisiae)
GO:  ATP binding    thymidylate kinase activity    dTDP biosynthesis    dTTP biosynthesis   


CHAIN: C
SWISS-PROT/TREMBL: P00572
   KEYWORD: 3D-structure    ATP-binding    Kinase    Nucleotide biosynthesis    Transferase   
EC: 2.7.4.9
SCOP: c.37.1.1 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    Nucleotide and nucleoside kinases    Thymidylate kinase    Baker's yeast (Saccharomyces cerevisiae)
GO:  ATP binding    thymidylate kinase activity    dTDP biosynthesis    dTTP biosynthesis   


CHAIN: D
SWISS-PROT/TREMBL: P00572
   KEYWORD: 3D-structure    ATP-binding    Kinase    Nucleotide biosynthesis    Transferase   
EC: 2.7.4.9
SCOP: c.37.1.1 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    Nucleotide and nucleoside kinases    Thymidylate kinase    Baker's yeast (Saccharomyces cerevisiae)
GO:  ATP binding    thymidylate kinase activity    dTDP biosynthesis    dTTP biosynthesis   


CHAIN: E
SWISS-PROT/TREMBL: P00572
   KEYWORD: 3D-structure    ATP-binding    Kinase    Nucleotide biosynthesis    Transferase   
EC: 2.7.4.9
SCOP: c.37.1.1 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    Nucleotide and nucleoside kinases    Thymidylate kinase    Baker's yeast (Saccharomyces cerevisiae)
GO:  ATP binding    thymidylate kinase activity    dTDP biosynthesis    dTTP biosynthesis   


CHAIN: F
SWISS-PROT/TREMBL: P00572
   KEYWORD: 3D-structure    ATP-binding    Kinase    Nucleotide biosynthesis    Transferase   
EC: 2.7.4.9
SCOP: c.37.1.1 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    Nucleotide and nucleoside kinases    Thymidylate kinase    Baker's yeast (Saccharomyces cerevisiae)
GO:  ATP binding    thymidylate kinase activity    dTDP biosynthesis    dTTP biosynthesis   


CHAIN: G
SWISS-PROT/TREMBL: P00572
   KEYWORD: 3D-structure    ATP-binding    Kinase    Nucleotide biosynthesis    Transferase   
EC: 2.7.4.9
SCOP: c.37.1.1 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    Nucleotide and nucleoside kinases    Thymidylate kinase    Baker's yeast (Saccharomyces cerevisiae)
GO:  ATP binding    thymidylate kinase activity    dTDP biosynthesis    dTTP biosynthesis   


CHAIN: H
SWISS-PROT/TREMBL: P00572
   KEYWORD: 3D-structure    ATP-binding    Kinase    Nucleotide biosynthesis    Transferase   
EC: 2.7.4.9
SCOP: c.37.1.1 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    Nucleotide and nucleoside kinases    Thymidylate kinase    Baker's yeast (Saccharomyces cerevisiae)
GO:  ATP binding    thymidylate kinase activity    dTDP biosynthesis    dTTP biosynthesis   
3tmk Image
Image Source: PDB

Stored Loops of 3tmk

Loops in ArchDB-EC clusters

3tmk_A_154 - HE => SUBCLASS : 4.38.1

Loops in ArchDB-KI clusters

3tmk_A_7 - EH => SUBCLASS : 6.1.1
3tmk_A_77 - HE => SUBCLASS : 1.1.1
3tmk_A_77 - HE => SUBCLASS : 2.1.1

Loops not clustered in ArchDB

3tmk_A_7 - EH
3tmk_A_33 - EH
3tmk_A_89 - EH
3tmk_A_128 - EH
3tmk_A_179 - EH
3tmk_A_113 - HE
3tmk_A_77 - HE
3tmk_A_18 - HE
3tmk_A_44 - HH
3tmk_A_62 - HH
3tmk_A_96 - HH

Loops not clustered in ArchDB-KI

3tmk_A_89 - EH
3tmk_A_33 - EH
3tmk_A_179 - EH
3tmk_A_128 - EH
3tmk_A_113 - HE
3tmk_A_154 - HE
3tmk_A_18 - HE
3tmk_A_96 - HH
3tmk_A_62 - HH
3tmk_A_44 - HH

Homologous structures to 3tmk classified in ArchDB

1tmk A - percentage of sequence identity: 100
1tmk B - percentage of sequence identity: 100
2tmk A - percentage of sequence identity: 100
2tmk B - percentage of sequence identity: 100
3tmk A - percentage of sequence identity: 100
3tmk B - percentage of sequence identity: 100
3tmk C - percentage of sequence identity: 100
3tmk D - percentage of sequence identity: 100
3tmk E - percentage of sequence identity: 100
3tmk F - percentage of sequence identity: 100
3tmk G - percentage of sequence identity: 100
3tmk H - percentage of sequence identity: 100