PDB: 4ubp Compound: urease (chain a) Classification: HYDROLASE Entry date in PDB: 2000-03-06 Resolution [Å]: 1.55 R-Factor: 0.151

CHAIN: A SWISS-PROT/TREMBL: P41022    KEYWORD: 3D-structure    Hydrolase    EC: 3.5.1.5 SCOP: d.8.1.1 Alpha and beta proteins (a+b)    Urease, gamma-subunit    Urease, gamma-subunit    Urease, gamma-subunit    Urease, gamma-subunit    Bacillus pasteurii GO:  nickel ion binding    urease activity    nitrogen compound metabolism    CHAIN: B SWISS-PROT/TREMBL: P41021    KEYWORD: 3D-structure    Hydrolase    EC: 3.5.1.5 SCOP: b.85.3.1 All beta proteins    beta-clip    Urease, beta-subunit    Urease, beta-subunit    Urease, beta-subunit    Bacillus pasteurii GO:  nickel ion binding    urease activity    nitrogen compound metabolism    CHAIN: C SWISS-PROT/TREMBL: P41020    KEYWORD: 3D-structure    Hydrolase    Metal-binding    Nickel    EC: 3.5.1.5 SCOP: b.92.1.1 All beta proteins    Composite domain of metallo-dependent hydrolases    Composite domain of metallo-dependent hydrolases    alpha-Subunit of urease    alpha-Subunit of urease    Bacillus pasteurii SCOP: b.92.1.1 All beta proteins    Composite domain of metallo-dependent hydrolases    Composite domain of metallo-dependent hydrolases    alpha-Subunit of urease    alpha-Subunit of urease    Bacillus pasteurii SCOP: c.1.9.2 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Metallo-dependent hydrolases    alpha-subunit of urease, catalytic domain    alpha-subunit of urease, catalytic domain    Bacillus pasteurii SCOP: c.1.9.2 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Metallo-dependent hydrolases    alpha-subunit of urease, catalytic domain    alpha-subunit of urease, catalytic domain    Bacillus pasteurii GO:  hydrolase activity    nickel ion binding    urease activity    nitrogen compound metabolism    urea metabolism

Image Source: PDB

Loops in ArchDB40 clusters

4ubp_A_79 - HA => SUBCLASS : 2.2.19
4ubp_C_69 - HA => SUBCLASS : 2.2.24
4ubp_C_449 - HA => SUBCLASS : 2.4.1
4ubp_C_538 - HA => SUBCLASS : 4.1.1
4ubp_C_538 - HA => SUBCLASS : 6.1.1
4ubp_C_19 - HA => SUBCLASS : 6.18.1
4ubp_C_492 - EH => SUBCLASS : 1.1.1
4ubp_C_492 - EH => SUBCLASS : 1.1.2
4ubp_B_74 - AR => SUBCLASS : 3.6.1
4ubp_B_27 - AR => SUBCLASS : 3.8.1
4ubp_C_120 - AR => SUBCLASS : 3.13.1
4ubp_B_74 - AR => SUBCLASS : 4.6.1
4ubp_C_497 - HH => SUBCLASS : 1.3.1
4ubp_C_330 - HH => SUBCLASS : 2.3.15
4ubp_A_32 - HH => SUBCLASS : 3.3.1
4ubp_A_5 - HH => SUBCLASS : 5.3.1
4ubp_C_311 - HH => SUBCLASS : 6.5.1

Loops in ArchDB95 clusters

4ubp_B_105 - EH => SUBCLASS : 3.2.1
4ubp_B_74 - AR => SUBCLASS : 1.1.2
4ubp_B_27 - AR => SUBCLASS : 5.1.1
4ubp_A_32 - HH => SUBCLASS : 3.2.1
4ubp_A_5 - HH => SUBCLASS : 5.13.1
4ubp_A_73 - HE => SUBCLASS : 2.3.8
4ubp_A_79 - HA => SUBCLASS : 2.2.7
4ubp_A_79 - HA => SUBCLASS : 2.2.30

Loops in ArchDB-EC clusters

4ubp_A_53 - HH => SUBCLASS : 9.9.1

Loops not clustered in ArchDB

4ubp_C_28 - AR
4ubp_B_40 - AR
4ubp_C_513 - AR
4ubp_B_55 - AR
4ubp_B_65 - AR
4ubp_B_27 - AR
4ubp_B_55 - AR
4ubp_B_65 - AR
4ubp_B_74 - AR
4ubp_B_82 - AR
4ubp_B_82 - AR
4ubp_C_28 - AR
4ubp_C_128 - AR
4ubp_C_93 - AR
4ubp_C_128 - AR
4ubp_C_120 - AR
4ubp_C_93 - AR
4ubp_C_513 - AR
4ubp_B_40 - AR
4ubp_C_133 - EH
4ubp_C_154 - EH
4ubp_C_193 - EH
4ubp_C_247 - EH
4ubp_C_296 - EH
4ubp_C_475 - EH
4ubp_C_271 - HA
4ubp_A_79 - HA
4ubp_C_435 - HA
4ubp_B_95 - HA
4ubp_C_546 - HA
4ubp_C_81 - HA
4ubp_C_538 - HA
4ubp_C_69 - HA
4ubp_C_455 - HA
4ubp_C_19 - HA
4ubp_B_95 - HA
4ubp_C_81 - HA
4ubp_C_449 - HA
4ubp_C_271 - HA
4ubp_C_435 - HA
4ubp_C_455 - HA
4ubp_C_546 - HA
4ubp_C_176 - HE
4ubp_C_229 - HE
4ubp_C_259 - HE
4ubp_C_412 - HE
4ubp_C_486 - HE
4ubp_C_5 - HE
4ubp_C_504 - HE
4ubp_C_145 - HE
4ubp_C_166 - HH
4ubp_C_205 - HH
4ubp_C_373 - HH
4ubp_C_400 - HH
4ubp_C_342 - HH

1a5k A - percentage of sequence identity: 74
1a5l A - percentage of sequence identity: 74
1a5m A - percentage of sequence identity: 74
1a5n A - percentage of sequence identity: 74
1a5o A - percentage of sequence identity: 74
1ef2 C - percentage of sequence identity: 74
1ejr A - percentage of sequence identity: 74
1ejs A - percentage of sequence identity: 74
1ejt A - percentage of sequence identity: 74
1eju A - percentage of sequence identity: 74
1ejv A - percentage of sequence identity: 74
1ejw A - percentage of sequence identity: 74
1ejx A - percentage of sequence identity: 74
1ejx C - percentage of sequence identity: 64
1fwa A - percentage of sequence identity: 74
1fwb A - percentage of sequence identity: 74
1fwc A - percentage of sequence identity: 74
1fwd A - percentage of sequence identity: 74
1fwe A - percentage of sequence identity: 74
1fwf A - percentage of sequence identity: 74
1fwg A - percentage of sequence identity: 74
1fwh A - percentage of sequence identity: 74
1fwi A - percentage of sequence identity: 74
1fwj A - percentage of sequence identity: 74
1ie7 A - percentage of sequence identity: 100
1kra A - percentage of sequence identity: 74
1krb A - percentage of sequence identity: 74
1krc A - percentage of sequence identity: 74
1s3t A - percentage of sequence identity: 100
1ubp A - percentage of sequence identity: 100
2fvh A - percentage of sequence identity: 65
2fvh B - percentage of sequence identity: 65
2fvh C - percentage of sequence identity: 65
2kau A - percentage of sequence identity: 74
2ubp A - percentage of sequence identity: 100
3ubp A - percentage of sequence identity: 100