Information on SUBCLASS 12.1.1 |
Subclass Accession number: 6919
Subclass: 12.1.1 Type: AR beta-beta link DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 54.3 +/- 24.5 Average RMSD (Å) : 0.317 +/- 0.075 Consensus geometry
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Consensus Sequence: | XFGhIDpppYTGShph |
(φψ)-conformation: | bblbbbaaabbebpbb |
Pattern: | [tv] | [VY] | x | [FL] | [G] | [FGY] | [IY] | [D] | [DST] | [ST] | [ky] | [FY] | [KT] | [G] | [S] | [IL] | [NT] | [TWY] | [TV] | [ADGP] |
Conservation: | -1.043 | 0.073 | -1.548 | 0.229 | 1.758 | -0.888 | -0.389 | 1.758 | -0.578 | -0.048 | -1.111 | 1.277 | -0.258 | 1.758 | 0.651 | 0.110 | 0.007 | -0.265 | -0.321 | -1.172 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bxo_A_163 | 1bxo | A | 164 | 183 | VYDFGFIDSSKYTGSLTYTG | EEEESS--GGGBSS--EEEE | bbxbvbbxaaabxebxbxbx |
1ibq_A_160 | 1ibq | A | 163 | 182 | VYDFGYIDDSKYTGSITYTD | EEEESS--GGGBSS--EEEE | bbbbvbbxaaabbexxbbbx |
1oew_A_166 | 1oew | A | 167 | 186 | TYNFGFIDTTAYTGSITYTA | EEEES---TTSSSS--EEEE | bbbbvbbxaaabbebxbxbx |
1qrp_E_164 | 1qrp | E | 164 | 183 | VVIFGGIDSSYYTGSLNWVP | EEEET---GGGBSS--EEEE | bbbxvebbaaabbebpxxbx |
2apr_*_167 | 2apr | - | 168 | 187 | EYIFGGYDSTKFKGSLTTVP | EEEET---GGGB-S--EEEE | bbbxvbbbaaabbexxbxbx |
4pep_*_163 | 4pep | - | 164 | 183 | VVLLGGIDSSYYTGSLNWVP | EEEET---TTSB-S--EEEE | bbbxvbbbaaabbebxbbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1bxo_A_163 | 1bxo | A | MANALPHA-D-MANNOSE | G - 163 |
1bxo_A_163 | 1bxo | A | MANALPHA-D-MANNOSE | V - 164 |
1bxo_A_163 | 1bxo | A | MANALPHA-D-MANNOSE | F - 167 |
1bxo_A_163 | 1bxo | A | MANALPHA-D-MANNOSE | G - 168 |
1bxo_A_163 | 1bxo | A | MANALPHA-D-MANNOSE | F - 169 |
1bxo_A_163 | 1bxo | A | GOLGLYCEROL | S - 172 |
1bxo_A_163 | 1bxo | A | GOLGLYCEROL | Y - 175 |
1bxo_A_163 | 1bxo | A | GOLGLYCEROL | G - 177 |
1bxo_A_163 | 1bxo | A | GOLGLYCEROL | S - 178 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1oew_A_166 | 1oew | A | AC4SO4 BINDING SITE FOR CHAIN A | Y - 178 |
1oew_A_166 | 1oew | A | AC4SO4 BINDING SITE FOR CHAIN A | S - 181 |
1oew_A_166 | 1oew | A | AC4SO4 BINDING SITE FOR CHAIN A | I - 182 |
Clusters included in this Subclass |
CLUSTER: AR.11.1 |