Information on SUBCLASS 2.5.5 |
Subclass Accession number: 3720
Subclass: 2.5.5 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0004553 (>75 %) GO:0004650 (>75 %) GO:0016798 (>75 %) SCOP : 51125 (>75 %) 51126 (>75 %) 51137 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 8.3 +/- 12.4 Average RMSD (Å) : 0.700 +/- 0.300 Consensus geometry
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Consensus Sequence: | hpcXph |
(φψ)-conformation: | bblpbb |
Pattern: | [AIV] | x | [NPV] | [DQT] | [ADG] | [ANT] | [HN] | [ILV] | [HRT] | [FL] | [DEN] | [DGN] | x | [QT] | [CIV] | [DS] |
Conservation: | -0.023 | -1.524 | -1.417 | -0.452 | -0.666 | -0.559 | 2.119 | 0.835 | -0.452 | 0.601 | 0.728 | 0.192 | -1.309 | 0.450 | 0.299 | 1.178 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1k5c_A_122 | 1k5c | A | 124 | 139 | VGPTDAHLTLDGITVD | EEEEEEEEEEES-EEE | bewbabxbbbbvxbbb |
1k5c_A_176 | 1k5c | A | 177 | 192 | AINDGNNIRFENNQCS | EEEEEEEEEEES-EEE | bxabebvbbbblbbbb |
1nhc_A_158 | 1nhc | A | 158 | 173 | ISVQATNVHLNDFTID | EEEEEEEEEEES-EEE | bbbbbblbbbblxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1k5c_A_122 | 1k5c | A | GOLGLYCEROL | P - 126 |
1k5c_A_122 | 1k5c | A | NAGN-ACETYL-D-GLUCOSAMINE | T - 127 |
1k5c_A_122 | 1k5c | A | GOLGLYCEROL | T - 127 |
1k5c_A_122 | 1k5c | A | NAGN-ACETYL-D-GLUCOSAMINE | D - 128 |
1k5c_A_122 | 1k5c | A | GOLGLYCEROL | D - 128 |
1k5c_A_122 | 1k5c | A | NAGN-ACETYL-D-GLUCOSAMINE | A - 129 |
1k5c_A_122 | 1k5c | A | NAGN-ACETYL-D-GLUCOSAMINE | H - 130 |
1k5c_A_176 | 1k5c | A | NAGN-ACETYL-D-GLUCOSAMINE | N - 182 |
1k5c_A_176 | 1k5c | A | NAGN-ACETYL-D-GLUCOSAMINE | N - 183 |
1nhc_A_158 | 1nhc | A | GOLGLYCEROL | Q - 161 |
Clusters included in this Subclass |
CLUSTER: AR.1.72 |