ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.16.1

Subclass Accession number: 3852
Subclass: 3.16.1

PSSM

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 16

Average sequence ID (%) : 42.9 +/- 27.1
Average RMSD (Å) : 0.369 +/- 0.149

Consensus geometry

d (Å): 7

delta (°): 90-135

theta (°): 135-180

rho (°): 225-270

Consensus Sequence:	FpPpphp
(φψ)-conformation:	bbwapbb

Pattern:	[lv]	x	[c]	x	[ailmv]	x	[dgns]	[f]	[fhmy]	[p]	[adegkrs]	[dehnps]	[aiv]	[aeknst]	[lv]	[dekqst]	[lw]	x	x
Conservation:	0.080	-0.731	2.345	-0.840	-0.388	-0.697	-0.242	1.280	0.275	1.635	-0.692	-0.613	0.045	-0.779	0.076	-0.664	1.652	-0.794	-0.948

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bec_*_145	1bec	-	145	163	LVCLARGFFPDHVELSWWV	EEEEEEEEBS--EEEEEEE	bbbbbbvbbwaxbbbbbbb
1c5c_L_129	1c5c	L	132	150	VVCLLNNFYPREAKVQWKV	EEEEEEEEBSS--EEEEEE	bbbbbblbbwaxbbbbbbb
1dqd_L_128	1dqd	L	131	149	VVCFLNNFYPRDINVKWKI	EEEEEEEEBSS--EEEEEE	bbbbbblbbwaxbbbbbbb
1fp5_A_460	1fp5	A	462	480	LACLIQNFMPEDISVQWLH	EEEEEEEEBSS--EEEEEE	bbbbbbvbbwaxbbbbbbb
1je6_A_197	1je6	A	200	218	VTCRASSFYPRNITLTWRQ	EEEEEEEEBSS--EEEEEE	bbbbbblbbwaxbbbbxbx
1k5n_A_198	1k5n	A	201	219	LRCWALGFYPAEITLTWQR	EEEEEEEEBSS--EEEEEE	bbbbbbvbbwapbbbbbbb
1k5n_B_21	1k5n	B	23	41	LNCYVSGFHPSDIEVDLLK	EEEEEEEEBSS--EEEEEE	bbbbbbvbbwaxbbbbbbb
1k8d_A_198	1k8d	A	201	219	LRCWALGFYPADITLTWQL	EEEEEEEESSS--EEEEEE	xbxbbblbbwaxbbbbbbb
1kcv_L_129	1kcv	L	132	150	VVCFLNSFYPKSIAVKWKV	EEEEEEEEBSS--EEEEEE	bbbbbblbbwaxbbbbbbb
1l6x_A_362	1l6x	A	365	383	LTCLVKGFYPSDIAVEWES	EEEEEEEEBSS--EEEEEE	bbbxbbvxbwaxbbbbbbb
1lk2_A_198	1lk2	A	201	219	LRCWALGFYPADITLTWQL	EEEEEEEEBSS--EEEEEE	bbxbbbvbbwaxbbbbbbb
1lk3_L_128	1lk3	L	131	149	VVCLMNNFYPRDISVKWKI	EEEEEEEEBSS--EEEEEE	bbbbbblbbwaxbbbbxbb
1mju_L_129	1mju	L	132	150	VVCFLNNFYPKDINVKWKI	EEEEEEEEBSS--EEEEEE	bbbbbblbbwaxbbbbbbb
1nj9_A_131	1nj9	A	133	151	LVCTITDFYPGVVTVDWKV	EEEEEEEESSS--EEEEEE	xbbxbblbbwabbbbbxbb
1onq_A_201	1onq	A	204	222	LVCHVSGFYPKPVWVMWMR	EEEEEEEEBSS--EEEEEE	xbbxbbvbbwapbbbbxbb
1q0x_L_129	1q0x	L	132	150	LVCTITDFYPGVVTVDWKV	EEEEEEEEBSS--EEEEEE	xbbxbblbbwabbbbbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1c5c_L_129	1c5c	L	GOLGLYCEROL	V - 133
1c5c_L_129	1c5c	L	GOLGLYCEROL	C - 134
1k5n_A_198	1k5n	A	GOLGLYCEROL	A - 211
1lk2_A_198	1lk2	A	MPD2-METHYL-2,4-PENTANEDIOL	W - 204
1lk2_A_198	1lk2	A	MPD2-METHYL-2,4-PENTANEDIOL	L - 206

Clusters included in this Subclass

CLUSTER: AR.4.42

CLUSTER: AR.6.17