ArchDB - Biological DataBase of Protein Loops

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Information on SUBCLASS 3.17.1

Subclass Accession number: 3853
Subclass: 3.17.1

PSSM

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 14

Average sequence ID (%) : 13.6 +/- 16.5
Average RMSD (Å) : 0.643 +/- 0.238

Consensus geometry

d (Å): 9

delta (°): 0-45

theta (°): 135-180

rho (°): 270-315

Consensus Sequence:	phXXcXX
(φψ)-conformation:	bbppgbb

Pattern:	x	[CILTV]	[aeknqrs]	[ACFILMV]	[aegnpst]	[dekprs]	[glw]	x	x	[afglpvy]
Conservation:	-1.000	1.187	0.731	0.670	-0.847	-0.518	1.452	-0.625	-1.133	-0.918

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ayo_A_44	1ayo	A	47	56	DVKMVSGFIP	EEE--TTEEE	bbxxxpvbbx
1cfb_*_673	1cfb	-	675	684	VVQMSPWANY	EEE--SSEEE	xbxbxxlbbb
1dun_*_42	1dun	-	42	51	KIQVPPNSFG	EEE--TTEEE	bbbbxpvbbx
1dx5_I_407	1dx5	I	407	415	.CECPEGYIL	.EE--TTEEE	.bbbxpvbbx
1fjs_L_106	1fjs	L	108	117	VCSCARGYTL	EEE--TTEEE	bbbbxxgbbx
1kli_L_109	1kli	L	111	120	SCRCHEGYSL	EEE--TTEEE	bxbbxpvbbx
1l5p_A_10	1l5p	A	13	21	QLKFEDDQT.	EEE--TTEE.	xbxbbpvxx.
1lml_*_533	1lml	-	533	541	.TNCTPGLRV	.EE--TT-EE	.bpbxpgxbb
1nps_A_40	1nps	A	40	49	SVKVPPGVKA	EEE--TTEEE	bbbbxpvbbb
1qiu_A_333	1qiu	A	335	344	AINAGKGLEF	EE---TTEEE	bxxxbxvbbb
1qiu_A_357	1qiu	A	358	367	KTKIGSGIDY	EE---TTEEE	bxxbbpvbbb
1qiu_A_373	1qiu	A	374	383	ITKLGAGLSF	EE---TTEEE	bxxxbxvbbx
1six_A_49	1six	A	50	59	AVAVPFGMVG	EEE--TTEEE	bbbxxpvbbx
1xbr_A_156	1xbr	A	156	164	.IMLNSLHKY	.EE--SSSEE	.xxbbxvbxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1cfb_*_673	1cfb	*	NAGN-ACETYL-D-GLUCOSAMINE	W - 681
1cfb_*_673	1cfb	*	NAGN-ACETYL-D-GLUCOSAMINE	A - 682
1cfb_*_673	1cfb	*	NAGN-ACETYL-D-GLUCOSAMINE	N - 683
1cfb_*_673	1cfb	*	NAGN-ACETYL-D-GLUCOSAMINE	Y - 684
1cfb_*_673	1cfb	*	NAGN-ACETYL-D-GLUCOSAMINE	T - 685
1cfb_*_673	1cfb	*	NAGN-ACETYL-D-GLUCOSAMINE	R - 687
1dx5_I_407	1dx5	I	CACALCIUM ION	G - 412
1fjs_L_106	1fjs	L	GOLGLYCEROL	C - 111
1fjs_L_106	1fjs	L	GOLGLYCEROL	A - 112
1fjs_L_106	1fjs	L	GOLGLYCEROL	R - 113
1fjs_L_106	1fjs	L	GOLGLYCEROL	Y - 115
1nps_A_40	1nps	A	CACALCIUM ION	Y - 52
1nps_A_40	1nps	A	CACALCIUM ION	Q - 53
1nps_A_40	1nps	A	CACALCIUM ION	N - 54

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1lml_*_533	1lml	*	CA3CARBOHYDRATE BINDING SITE.	N - 534

Clusters included in this Subclass

CLUSTER: AR.3.73

CLUSTER: AR.4.51

CLUSTER: AR.5.63